Differences

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--- maxbin2-software [2020/03/15 09:52] – aorth
+++ maxbin2-software [2020/03/15 10:42] (current) – aorth
@@ Line 18: / Line 18: @@
 $ run_MaxBin.pl</code>
+**Note:** Please use the ''-thread'' option to match the number of CPU threads requested in your SBATCH job parameters (default 1).
 ===== Installation ======
@@ Line 23: / Line 24: @@
 <code>
+$ cd /tmp
+$ wget 'https://downloads.sourceforge.net/project/maxbin2/MaxBin-2.2.7.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fmaxbin2%2Ffiles%2Flatest%2Fdownload&ts=1584261396' -O MaxBin-2.2.7.tar.gz
+$ tar xf MaxBin-2.2.7.tar.gz
+$ cd MaxBin-2.2.7/src
+$ scl enable devtoolset-7 bash
+$ make
+$ sed run_MaxBin.pl -i \
+  -e 's/idba_ud/idba_hybrid/' \
+  -e 's_IDBA\\-UD_IDBA\\-Hybrid_'
+$ rm src/*.o
+$ sudo cp -r *.hmm *.pl *.r src /export/apps/maxbin2/2.2.7
+$ sudo chown -R root:root /export/apps/maxbin2/2.2.7
 </code>
+Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''idba_hybrid''. Old tarballs are not available so I will try to see if patching ''run_MaxBin.pl'' to use the new ''idba_hybrid'' binary works...