Differences

This shows you the differences between two versions of the page.

--- masurca-software [2014/09/30 09:05] – aorth
+++ masurca-software [2018/11/10 14:23] – aorth
@@ Line 1: / Line 1: @@
 ====== MaSuRCA ======
-MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).
+The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.
 ===== Information =====
-  * Version: 2.3.1
+  * Version: 2.3.2
   * Added: September, 2014
   * Link: http://www.genome.umd.edu/masurca.html
@@ Line 16: / Line 16: @@
 Notes from the sysadmin during installation:
-<code>wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=36046372&d=3b9bd77c404ec8a48b1fe42aac9a3eb6082f8e58' -O MaSuRCA-2.3.1.tar.gz
+<code>$ cd /tmp
-tar zxf MaSuRCA-2.3.1.tar.gz -C /tmp/
+$ wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=38900637&d=47784a9fd97c4cc396300a9c11cc9ab3096b11c3' -O MaSuRCA-2.3.2.tar.gz
-cd /tmp/MaSuRCA-2.3.1/
+$ tar xf MaSuRCA-2.3.2.tar.gz
-sudo mkdir -p /export/apps/masurca/2.3.1
+$ cd MaSuRCA-2.3.2
-sudo chown aorth /export/apps/masurca/2.3.1
+$ mkdir -p /export/apps/masurca/2.3.2
-DEST=/export/apps/masurca/2.3.1 ./install.sh
+$ sudo chown aorth /export/apps/masurca/2.3.2
-sudo chown -R root:root /export/apps/masurca/2.3.1</code>
+$ scl enable devtoolset-2 bash
+$ DEST=/export/apps/masurca/2.3.2 ./install.sh
+$ sudo chown -R root:root /export/apps/masurca/2.3.2</code>
 Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html