maker-software
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Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
maker-software [2021/07/07 06:46] – aorth | maker-software [2021/11/01 09:11] (current) – aorth | ||
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$ maker -h</ | $ maker -h</ | ||
- | **Note:** Maker generates literally millions of small files. Please please please make sure you direct your program output to the local ''/ | + | **Note |
+ | |||
+ | **Note 2:** Maker uses a lot of temporary storage in ''/ | ||
===== Installation ====== | ===== Installation ====== | ||
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$ wget https:// | $ wget https:// | ||
$ sudo rpm --root=/ | $ sudo rpm --root=/ | ||
- | $ sudo yum --installroot=/ | + | $ sudo yum --installroot=/ |
$ sudo cp / | $ sudo cp / | ||
$ sudo mount --bind /dev/ / | $ sudo mount --bind /dev/ / | ||
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# cp -r maker/* / | # cp -r maker/* / | ||
# cd / | # cd / | ||
- | # Check dependencies that need satisfying... | + | # Check Perl dependencies that need satisfying... |
# perl Build.PL | # perl Build.PL | ||
# cpanm -l / | # cpanm -l / | ||
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$ perl Build.PL | $ perl Build.PL | ||
$ module load repeatmasker/ | $ module load repeatmasker/ | ||
+ | # change permissions on this table of contents that Maker' | ||
+ | $ sudo chown -R aorth:aorth / | ||
+ | # install mpich-3.2-devel so we can get mpicc to enable MPI support in Maker | ||
+ | $ sudo yum install mpich-3.2-devel.x86_64 | ||
$ perl Build.PL | $ perl Build.PL | ||
$ ./Build install | $ ./Build install |
maker-software.1625640406.txt.gz · Last modified: 2021/07/07 06:46 by aorth