User Tools

Site Tools


maker-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
Last revisionBoth sides next revision
maker-software [2020/11/02 12:10] – created aorthmaker-software [2021/07/07 07:34] aorth
Line 26: Line 26:
 <code>$ mkdir -p /var/tmp/chroot/maker <code>$ mkdir -p /var/tmp/chroot/maker
 $ rpm --rebuilddb --root=/var/tmp/chroot/maker $ rpm --rebuilddb --root=/var/tmp/chroot/maker
-$ wget https://hpc.ilri.cgiar.org/mirror/centos/7/os/x86_64/Packages/centos-release-7-8.2003.0.el7.centos.x86_64.rpm+$ wget https://hpc.ilri.cgiar.org/mirror/centos/7/os/x86_64/Packages/centos-release-7-9.2009.0.el7.centos.x86_64.rpm 
 +$ sudo rpm --root=/var/tmp/chroot/maker -i centos-release-7-9.2009.0.el7.centos.x86_64.rpm
 $ sudo yum --installroot=/var/tmp/chroot/maker install -y rpm-build yum gcc wget vim perl perl-App-cpanminus.noarch expat-devel $ sudo yum --installroot=/var/tmp/chroot/maker install -y rpm-build yum gcc wget vim perl perl-App-cpanminus.noarch expat-devel
 $ sudo cp /etc/resolv.conf /var/tmp/chroot/maker/etc $ sudo cp /etc/resolv.conf /var/tmp/chroot/maker/etc
Line 38: Line 39:
 # cp -r maker/* /export/apps/maker/3.01.03 # cp -r maker/* /export/apps/maker/3.01.03
 # cd /export/apps/maker/3.01.03/src # cd /export/apps/maker/3.01.03/src
-# Check dependencies that need satisfying...+# Check Perl dependencies that need satisfying...
 # perl Build.PL # perl Build.PL
 # cpanm -l /export/apps/maker/3.01.03/deps DBD::SQLite # cpanm -l /export/apps/maker/3.01.03/deps DBD::SQLite
Line 58: Line 59:
 $ perl Build.PL $ perl Build.PL
 $ module load repeatmasker/4.1.1 snap/2013-11-29 exonerate/2.2.0 augustus/3.2.3 $ module load repeatmasker/4.1.1 snap/2013-11-29 exonerate/2.2.0 augustus/3.2.3
 +# change permissions on this table of contents that Maker's build script wants to touch:
 +$ sudo chown -R aorth:aorth /export/apps/perl/5.16.3.1603/html/perltoc.html
 +# install mpich-3.2-devel so we can get mpicc to enable MPI support in Maker
 +$ sudo yum install mpich-3.2-devel.x86_64
 $ perl Build.PL $ perl Build.PL
 $ ./Build install $ ./Build install
maker-software.txt · Last modified: 2021/11/01 09:11 by aorth