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mafft-software [2018/01/15 16:49] – aorthmafft-software [2023/09/07 09:39] (current) – aorth
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 MAFFT is a multiple sequence alignment program for unix-like operating systems.  It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.  MAFFT is a multiple sequence alignment program for unix-like operating systems.  It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc. 
  
-  * Latest Version: 7.313+  * Latest Version: 7.475
   * Added: October, 2011   * Added: October, 2011
-  * Updated: January, 2018 +  * Updated: September, 2023 
-  * Link: https://mafft.cbrc.jp/alignment/software/+  * Link: https://mafft.cbrc.jp/alignment/software
  
 ===== Usage ===== ===== Usage =====
-Show all available versions of mafft:+Show all available versions:
  
 <code>$ module avail mafft</code> <code>$ module avail mafft</code>
  
-Load a particular version of mafft:+Load one version into your environment and run it:
  
-<code>$ module load mafft/7.313</code>+<code>$ module load mafft/7.505 
 +$ mafft</code>
  
 ===== Installation ===== ===== Installation =====
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-src.tgz +$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.505-with-extensions-src.tgz 
-$ tar xf mafft-7.313-with-extensions-src.tgz +$ tar xf mafft-7.505-with-extensions-src.tgz  
-$ cd mafft-7.313-with-extensions/core +$ cd mafft-7.505-with-extensions/core 
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile +$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.505/' Makefile
-$ make clean+
 $ make $ make
-$ sudo mkdir -p /export/apps/mafft/7.313 +$ sudo mkdir -p /export/apps/mafft/7.505 
-$ sudo chown aorth /export/apps/mafft/7.313+$ sudo chown aorth /export/apps/mafft/7.505
 $ make install $ make install
 $ cd ../extensions $ cd ../extensions
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile +$ vim Makefile 
-$ make clean+$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.505/' Makefile
 $ make $ make
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/mafft/7.313</code>+$ sudo chown -R root:root /export/apps/mafft/7.505</code>
mafft-software.1516034940.txt.gz · Last modified: 2018/01/15 16:49 by aorth