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list-of-software [2025/12/05 07:16] aorthlist-of-software [2026/05/15 09:46] (current) aorth
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 |bayescan|2.1|''module load bayescan/2.1''| | |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| | |[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| |
-|[[bcftools-software|bcftools]]|1.17|''module load bcftools/1.17''| |+|[[bcftools-software|bcftools]]|1.22|''module load bcftools/1.22''| |
 |bcl2fastq|2.20.0.422|''bcl2fastq''| | |bcl2fastq|2.20.0.422|''bcl2fastq''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| | |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
Line 90: Line 90:
 |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| | |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
 |[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| | |[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| |
-|[[dorado-software|dorado]]|1.3.0|''module load dorado/1.3.0''| |+|[[dorado-software|dorado]]|1.4.0|''module load dorado/1.4.0''| |
 |[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| | |[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| | |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
Line 264: Line 264:
 |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| | |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|25.04 (25.04.6)|''module load nextflow/25.04''| |+|[[nextflow-software|nextflow]]|26.04 (26.04.1)|''module load nextflow/26.04''| |
 |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| | |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
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 |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| | |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| |
 |[[quorum-software|quorum]]|1.1.1|''module load quorum/1.1.1''| | |[[quorum-software|quorum]]|1.1.1|''module load quorum/1.1.1''| |
-|[[r-software|R]]|4.4.3|''module load R/4.4''| |+|[[r-software|R]]|4.5.2|''module load R/4.5''| |
 |[[racon-software|racon]]|1.5.0|''module load racon/1.5.0''| | |[[racon-software|racon]]|1.5.0|''module load racon/1.5.0''| |
 |[[rapidnj-software|rapidnj]]|2.3.2|''module load rapidnj/2.3.2''| | |[[rapidnj-software|rapidnj]]|2.3.2|''module load rapidnj/2.3.2''| |
Line 349: Line 349:
 |[[samtools-software|samtools]]|1.22.1|''module load samtools/1.22.1''| | |[[samtools-software|samtools]]|1.22.1|''module load samtools/1.22.1''| |
 |[[sailfish-software|sailfish]]|0.9.2|''module load sailfish/0.9.2''| | |[[sailfish-software|sailfish]]|0.9.2|''module load sailfish/0.9.2''| |
-|[[salmon-software|salmon]]|1.3.0|''module load salmon/1.3.0''| |+|[[salmon-software|salmon]]|1.10.0|''module load salmon/1.10.0''| |
 |[[salsa-software|salsa]]|git-974589f3|''module load salsa/git-974589f3''| | |[[salsa-software|salsa]]|git-974589f3|''module load salsa/git-974589f3''| |
 |[[satsuma2-software|satsuma2]]|git-37c5f386|''module load satsuma2/git-37c5f386''| | |[[satsuma2-software|satsuma2]]|git-37c5f386|''module load satsuma2/git-37c5f386''| |
Line 357: Line 357:
 |[[seroba-software|seroba]]|1.0.0|''module load seroba/1.0.0''| | |[[seroba-software|seroba]]|1.0.0|''module load seroba/1.0.0''| |
 |seq_crumbs|0.1.8|''module load seq_crumbs/0.1.8''| | |seq_crumbs|0.1.8|''module load seq_crumbs/0.1.8''| |
-|[[seqkit-software|seqkit]]|0.11.0|''module load seqkit/0.11.0''| |+|[[seqkit-software|seqkit]]|2.12.0|''module load seqkit/2.12.0''| |
 |[[seqqs-software|seqqs]]|git-3d053750|''module load seqqs/git-3d053750''| | |[[seqqs-software|seqqs]]|git-3d053750|''module load seqqs/git-3d053750''| |
 |[[seqtk-software|seqtk]]|1.4|''module load seqtk/1.4''| | |[[seqtk-software|seqtk]]|1.4|''module load seqtk/1.4''| |
list-of-software.1764918991.txt.gz · Last modified: by aorth