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list-of-software [2025/05/13 12:47] – aorthlist-of-software [2025/08/25 09:35] (current) – aorth
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 |[[coperead-software|COPEread]]|1.1.2|''module load coperead/1.1.2''| | |[[coperead-software|COPEread]]|1.1.2|''module load coperead/1.1.2''| |
 |[[corset-software|corset]]|1.06|''module load corset/1.06''| | |[[corset-software|corset]]|1.06|''module load corset/1.06''| |
 +|[[crispresso2-software|crispresso2]]|2.3.2|''module load crispresso2/2.3.2''| |
 |cufflinks|2.2.1|''module load cufflinks/2.2.1''| | |cufflinks|2.2.1|''module load cufflinks/2.2.1''| |
 |[[cutadapt-software|cutadapt]]|5.0|''module load cutadapt/5.0''| | |[[cutadapt-software|cutadapt]]|5.0|''module load cutadapt/5.0''| |
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 |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| | |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
 |[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| | |[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| |
-|[[dorado-software|dorado]]|0.9.1|''module load dorado/0.9.1''| |+|[[dorado-software|dorado]]|1.1.0|''module load dorado/1.1.0''| | 
 +|[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| | |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| | |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
 |[[eagle-software|eagle]]|2.4.1|''module load eagle/2.4.1''| | |[[eagle-software|eagle]]|2.4.1|''module load eagle/2.4.1''| |
 +|[[easer-software|easer]]|1.7.0|''module load easer/1.7.0''| |
 +|[[ectyper-software|ectyper]]|2.0.0|''module load ectyper/2.0.0''| |
 |[[edirect-software|edirect]]| 7.80 | ''module load edirect/7.80'' | | |[[edirect-software|edirect]]| 7.80 | ''module load edirect/7.80'' | |
 |[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | ''module load eggnog-mapper/2.1.9'' | | |[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | ''module load eggnog-mapper/2.1.9'' | |
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 |[[emblmygff3-software|emblmygff3]]|2.1|''module load emblmygff3/2.1''| | |[[emblmygff3-software|emblmygff3]]|2.1|''module load emblmygff3/2.1''| |
 |[[emboss-software|emboss]]|6.6.0|''module load emboss/6.6.0''| | |[[emboss-software|emboss]]|6.6.0|''module load emboss/6.6.0''| |
-|[[easer-software|easer]]|1.7.0|''module load easer/1.7.0''| | 
 |est2uni|latest|''module load est2uni/latest''| | |est2uni|latest|''module load est2uni/latest''| |
 |[[exabayes-software|exabayes]]|1.4.1|''module load exabayes/1.4.1''| | |[[exabayes-software|exabayes]]|1.4.1|''module load exabayes/1.4.1''| |
 |[[express-software|express]]|1.5.1|''module load express/1.5.1''| | |[[express-software|express]]|1.5.1|''module load express/1.5.1''| |
 +|[[ezclermont-software|ezclermont]]|0.7.0|''module load ezclermont/0.7.0''| |
 |[[falco-software|falco]]|0.3.0|''module load falco/0.3.0''| | |[[falco-software|falco]]|0.3.0|''module load falco/0.3.0''| |
 |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| |
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 |[[fastp-software|fastp]]|0.24.1|''module load fastp/0.24.1''| | |[[fastp-software|fastp]]|0.24.1|''module load fastp/0.24.1''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 +|[[fastq-demux-software|fastq_demux]]|git-dff5823f|''module load fastq_demux/git-dff5823f''| |
 |[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| | |[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| |
 |[[fastqc-software|fastqc]]|0.11.9|''module load fastqc/0.11.9''| | |[[fastqc-software|fastqc]]|0.11.9|''module load fastqc/0.11.9''| |
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 |glimmer|3.02|''module load glimmer/3.02''| | |glimmer|3.02|''module load glimmer/3.02''| |
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| | |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
 +|[[gofasta-software|gofasta]]|1.2.3|''module load gofasta/1.2.3''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| | |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
 |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| | |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
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 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| | |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| | |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
-|[[iqtree-software|iqtree]]|2.2.0|''module load iqtree/2.2.0''| |+|[[iqtree-software|iqtree]]|2.4.0|''module load iqtree/2.4.0''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| | |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| | |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
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 |i-tasser|latest|''module load i-tasser/latest''| | |i-tasser|latest|''module load i-tasser/latest''| |
 |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| | |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| |
 +|[[jclusterfunk-software|jclusterfunk]]|0.0.25|''module load jclusterfunk/0.0.25''| |
 |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| | |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| |
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| | |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
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 |[[kaiju-software|kaiju]]|1.8.2|''module load kaiju/1.8.2''| | |[[kaiju-software|kaiju]]|1.8.2|''module load kaiju/1.8.2''| |
 |[[kallisto-software|kallisto]]|0.43.0|''module load kallisto/0.43.0''| | |[[kallisto-software|kallisto]]|0.43.0|''module load kallisto/0.43.0''| |
 +|[[kaptive-software|kaptive]]|3.1.0|''module load kaptive/3.1.0''| |
 |[[karect-software|karect]]|1.0|''module load karect/1.0''| | |[[karect-software|karect]]|1.0|''module load karect/1.0''| |
 |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| | |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| |
 +|[[kleborate-software|kleborate]]|3.2.4|''module load kleborate/3.2.4''| |
 |[[kma-software|kma]]|1.4.21|''module load kma/1.4.21''| | |[[kma-software|kma]]|1.4.21|''module load kma/1.4.21''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| | |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
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 |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| | |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|24.04 (24.04.2)|''module load nextflow/24.04''| |+|[[nextflow-software|nextflow]]|25.04 (25.04.6)|''module load nextflow/25.04''| |
 |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| | |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
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 |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| | |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
 +|[[raven-software|raven]]|1.8.3|''module load raven/1.8.3''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| | |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
 |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| | |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| |
Line 326: Line 336:
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| | |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
-|[[resfinder-software|resfinder]]|4.6.0|''module load resfinder/4.6.0''| |+|[[resfinder-software|resfinder]]|4.7.2|''module load resfinder/4.7.2''| |
 |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| | |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| | |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
Line 332: Line 342:
 |[[root-software|root]]|6.08.06|''module load root/6.08.06''| | |[[root-software|root]]|6.08.06|''module load root/6.08.06''| |
 |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| | |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| |
-|[[rsem-software|RSEM]]|1.3.1|''module load RSEM/1.3.1''| |+|[[rsem-software|RSEM]]|1.3.3|''module load RSEM/1.3.3''| |
 |[[rseqc-software|rseqc]]|2.6.4|''module load rseqc/2.6.4''| | |[[rseqc-software|rseqc]]|2.6.4|''module load rseqc/2.6.4''| |
 |[[ruby-software|ruby]]|3.1 (3.1.4)|''module load ruby/3.1''| | |[[ruby-software|ruby]]|3.1 (3.1.4)|''module load ruby/3.1''| |
Line 375: Line 385:
 |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| |
 |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| | |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| |
-|[[spades-software|spades]]|3.15 (3.15.5)|''module load spades/3.15''| |+|[[spades-software|spades]]|4.2.0|''module load spades/4.2.0''| |
 |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| | |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| |
 |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| | |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| |
Line 381: Line 391:
 |spread|1.0.6|''module load spread/1.0.6''| | |spread|1.0.6|''module load spread/1.0.6''| |
 |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| | |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| |
 +|[[squirrel-software|squirrel]]|1.1.2|''module load squirrel/1.1.2''| |
 |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| | |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| |
 |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| | |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| |
list-of-software.1747140446.txt.gz · Last modified: by aorth