list-of-software
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| list-of-software [2025/05/13 10:18] – aorth | list-of-software [2025/08/25 09:35] (current) – aorth | ||
|---|---|---|---|
| Line 80: | Line 80: | ||
| |[[coperead-software|COPEread]]|1.1.2|'' | |[[coperead-software|COPEread]]|1.1.2|'' | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| + | |[[crispresso2-software|crispresso2]]|2.3.2|'' | ||
| |cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
| |[[cutadapt-software|cutadapt]]|5.0|'' | |[[cutadapt-software|cutadapt]]|5.0|'' | ||
| Line 89: | Line 90: | ||
| |[[disty-software|disty]]|0.1.0|'' | |[[disty-software|disty]]|0.1.0|'' | ||
| |[[dnaapler-software|dnaapler]]|1.2.0|'' | |[[dnaapler-software|dnaapler]]|1.2.0|'' | ||
| - | |[[dorado-software|dorado]]|0.9.1|'' | + | |[[dorado-software|dorado]]|1.1.0|'' |
| + | |[[dragonflye-software|dragonflye]]|1.2.1|'' | ||
| |[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
| |[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
| |[[eagle-software|eagle]]|2.4.1|'' | |[[eagle-software|eagle]]|2.4.1|'' | ||
| + | |[[easer-software|easer]]|1.7.0|'' | ||
| + | |[[ectyper-software|ectyper]]|2.0.0|'' | ||
| |[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
| |[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | '' | |[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | '' | ||
| Line 98: | Line 102: | ||
| |[[emblmygff3-software|emblmygff3]]|2.1|'' | |[[emblmygff3-software|emblmygff3]]|2.1|'' | ||
| |[[emboss-software|emboss]]|6.6.0|'' | |[[emboss-software|emboss]]|6.6.0|'' | ||
| - | |[[easer-software|easer]]|1.7.0|'' | ||
| |est2uni|latest|'' | |est2uni|latest|'' | ||
| |[[exabayes-software|exabayes]]|1.4.1|'' | |[[exabayes-software|exabayes]]|1.4.1|'' | ||
| |[[express-software|express]]|1.5.1|'' | |[[express-software|express]]|1.5.1|'' | ||
| + | |[[ezclermont-software|ezclermont]]|0.7.0|'' | ||
| |[[falco-software|falco]]|0.3.0|'' | |[[falco-software|falco]]|0.3.0|'' | ||
| |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
| Line 107: | Line 111: | ||
| |[[fastp-software|fastp]]|0.24.1|'' | |[[fastp-software|fastp]]|0.24.1|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| + | |[[fastq-demux-software|fastq_demux]]|git-dff5823f|'' | ||
| |[[fastq-scan-software|fastq-scan]]|1.0.1|'' | |[[fastq-scan-software|fastq-scan]]|1.0.1|'' | ||
| |[[fastqc-software|fastqc]]|0.11.9|'' | |[[fastqc-software|fastqc]]|0.11.9|'' | ||
| Line 119: | Line 124: | ||
| |[[flexbar-software|flexbar]]|2.7.0|'' | |[[flexbar-software|flexbar]]|2.7.0|'' | ||
| |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | ||
| - | |[[flye-software|flye]]|2.9.4|'' | + | |[[flye-software|flye]]|2.9.6|'' |
| |frappe|1.1|'' | |frappe|1.1|'' | ||
| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| Line 134: | Line 139: | ||
| |glimmer|3.02|'' | |glimmer|3.02|'' | ||
| |glu|1.0b3-prerelease4|'' | |glu|1.0b3-prerelease4|'' | ||
| + | |[[gofasta-software|gofasta]]|1.2.3|'' | ||
| |[[gmap-software|gmap]]|2015-12-31|'' | |[[gmap-software|gmap]]|2015-12-31|'' | ||
| |[[graphlan-software|graphlan]]|1.1.3|'' | |[[graphlan-software|graphlan]]|1.1.3|'' | ||
| Line 167: | Line 173: | ||
| |[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
| |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
| - | |[[iqtree-software|iqtree]]|2.2.0|'' | + | |[[iqtree-software|iqtree]]|2.4.0|'' |
| |[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
| |[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
| Line 175: | Line 181: | ||
| |i-tasser|latest|'' | |i-tasser|latest|'' | ||
| |[[ivar-software|ivar]]|1.3.1|'' | |[[ivar-software|ivar]]|1.3.1|'' | ||
| + | |[[jclusterfunk-software|jclusterfunk]]|0.0.25|'' | ||
| |[[jellyfish-software|jellyfish]]|2.3.0|'' | |[[jellyfish-software|jellyfish]]|2.3.0|'' | ||
| |jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
| Line 181: | Line 188: | ||
| |[[kaiju-software|kaiju]]|1.8.2|'' | |[[kaiju-software|kaiju]]|1.8.2|'' | ||
| |[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
| + | |[[kaptive-software|kaptive]]|3.1.0|'' | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| |[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
| + | |[[kleborate-software|kleborate]]|3.2.4|'' | ||
| |[[kma-software|kma]]|1.4.21|'' | |[[kma-software|kma]]|1.4.21|'' | ||
| |[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
| Line 212: | Line 221: | ||
| |[[mcscanx-software|mcscanx]]|git-97e74f40|'' | |[[mcscanx-software|mcscanx]]|git-97e74f40|'' | ||
| |[[mecat-software|MECAT]]|git-d04bfa84|'' | |[[mecat-software|MECAT]]|git-d04bfa84|'' | ||
| - | |[[medaka-software|medaka]]|1.4.3|'' | + | |[[medaka-software|medaka]]|1.12.1|'' |
| |[[megahit-software|megahit]]|1.2.9|'' | |[[megahit-software|megahit]]|1.2.9|'' | ||
| |megan|4.70.4|'' | |megan|4.70.4|'' | ||
| Line 254: | Line 263: | ||
| |[[nextclade-software|nextclade]]|2.11.0|'' | |[[nextclade-software|nextclade]]|2.11.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|24.04 (24.04.2)|'' | + | |[[nextflow-software|nextflow]]|25.04 (25.04.6)|'' |
| |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| Line 291: | Line 300: | ||
| |[[pod5-software|pod5]]|0.3.2|'' | |[[pod5-software|pod5]]|0.3.2|'' | ||
| |[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
| + | |[[polypolish-software|polypolish]]|0.6.0|'' | ||
| |[[poplddecay-software|poplddecay]]|3.41|'' | |[[poplddecay-software|poplddecay]]|3.41|'' | ||
| |[[porechop-software|porechop]]|0.3.2pre|'' | |[[porechop-software|porechop]]|0.3.2pre|'' | ||
| Line 316: | Line 326: | ||
| |[[rasusa-software|rasusa]]|2.1.0|'' | |[[rasusa-software|rasusa]]|2.1.0|'' | ||
| |[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
| + | |[[raven-software|raven]]|1.8.3|'' | ||
| |[[raxml-software|RAxML]]|8.2.12|'' | |[[raxml-software|RAxML]]|8.2.12|'' | ||
| |[[raxml-ng-software|raxml-ng]]|1.2.2|'' | |[[raxml-ng-software|raxml-ng]]|1.2.2|'' | ||
| Line 325: | Line 336: | ||
| |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| - | |[[resfinder-software|resfinder]]|4.6.0|'' | + | |[[resfinder-software|resfinder]]|4.7.2|'' |
| |[[rgi-software|rgi]]|6.0.2|'' | |[[rgi-software|rgi]]|6.0.2|'' | ||
| |[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
| Line 331: | Line 342: | ||
| |[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
| |[[rrnaselector-software|rRNASelector]]|1.1|'' | |[[rrnaselector-software|rRNASelector]]|1.1|'' | ||
| - | |[[rsem-software|RSEM]]|1.3.1|'' | + | |[[rsem-software|RSEM]]|1.3.3|'' |
| |[[rseqc-software|rseqc]]|2.6.4|'' | |[[rseqc-software|rseqc]]|2.6.4|'' | ||
| |[[ruby-software|ruby]]|3.1 (3.1.4)|'' | |[[ruby-software|ruby]]|3.1 (3.1.4)|'' | ||
| Line 374: | Line 385: | ||
| |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | ||
| |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | ||
| - | |[[spades-software|spades]]|3.15 (3.15.5)|'' | + | |[[spades-software|spades]]|4.2.0|'' |
| |[[sourmash-software|sourmash]]|1.0|'' | |[[sourmash-software|sourmash]]|1.0|'' | ||
| |[[speedseq-software|speedseq]]|0.1.2|'' | |[[speedseq-software|speedseq]]|0.1.2|'' | ||
| Line 380: | Line 391: | ||
| |spread|1.0.6|'' | |spread|1.0.6|'' | ||
| |[[squid-software|squid]]|1.9g|'' | |[[squid-software|squid]]|1.9g|'' | ||
| + | |[[squirrel-software|squirrel]]|1.1.2|'' | ||
| |[[sratoolkit-software|sratoolkit]]|2.10.0|'' | |[[sratoolkit-software|sratoolkit]]|2.10.0|'' | ||
| |[[sra-tools-software|sra-tools]]|3.0.0|'' | |[[sra-tools-software|sra-tools]]|3.0.0|'' | ||
list-of-software.1747131494.txt.gz · Last modified: by aorth