Differences

This shows you the differences between two versions of the page.

--- list-of-software [2025/05/13 10:18] – aorth
+++ list-of-software [2025/05/30 07:40] (current) – aorth
@@ Line 1: / Line 1: @@
-f====== List of Software ======
+====== List of Software ======
 In general you can use the command ''module avail'' to show you the list of available software and their versions. Sometimes there are other software packages installed which aren't listed via the modules system; if you're curious you can look around in ///export/apps// to see if you can find what you're looking for.
@@ Line 89: / Line 89: @@
 |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
 |[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| |
-|[[dorado-software|dorado]]|0.9.1|''module load dorado/0.9.1''| |
+|[[dorado-software|dorado]]|0.9.5|''module load dorado/0.9.5''| |
+|[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
@@ Line 119: / Line 120: @@
 |[[flexbar-software|flexbar]]|2.7.0|''module load flexbar/2.7.8''| |
 |[[flux-capacitor-software|flux-capacitor]]|1.6.1|''module load flux-capacitor/1.6.1''| |
-|[[flye-software|flye]]|2.9.4|''module load flye/2.9.4''| |
+|[[flye-software|flye]]|2.9.6|''module load flye/2.9.6''| |
 |frappe|1.1|''module load frappe/1.1''| |
 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
@@ Line 134: / Line 135: @@
 |glimmer|3.02|''module load glimmer/3.02''| |
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
+|[[gofasta-software|gofasta]]|1.2.3|''module load gofasta/1.2.3''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
 |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
@@ Line 167: / Line 169: @@
 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
-|[[iqtree-software|iqtree]]|2.2.0|''module load iqtree/2.2.0''| |
+|[[iqtree-software|iqtree]]|2.4.0|''module load iqtree/2.4.0''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
@@ Line 175: / Line 177: @@
 |i-tasser|latest|''module load i-tasser/latest''| |
 |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| |
+|[[jclusterfunk-software|jclusterfunk]]|0.0.25|''module load jclusterfunk/0.0.25''| |
 |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| |
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
@@ Line 212: / Line 215: @@
 |[[mcscanx-software|mcscanx]]|git-97e74f40|''module load mcscanx/git-97e74f40''| |
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
-|[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |
+|[[medaka-software|medaka]]|1.12.1|''module load medaka/1.12.1''| |
 |[[megahit-software|megahit]]|1.2.9|''module load megahit/1.2.9''| |
 |megan|4.70.4|''module load megan/4.70.4''| |
@@ Line 291: / Line 294: @@
 |[[pod5-software|pod5]]|0.3.2|''module load pod5/0.3.2''| |
 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
+|[[polypolish-software|polypolish]]|0.6.0|''module load polypolish/0.6.0''| |
 |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| |
 |[[porechop-software|porechop]]|0.3.2pre|''module load porechop/0.3.2pre''| |
@@ Line 316: / Line 320: @@
 |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
+|[[raven-software|raven]]|1.8.3|''module load raven/1.8.3''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
 |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| |
@@ Line 325: / Line 330: @@
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
-|[[resfinder-software|resfinder]]|4.6.0|''module load resfinder/4.6.0''| |
+|[[resfinder-software|resfinder]]|4.7.2|''module load resfinder/4.7.2''| |
 |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
@@ Line 374: / Line 379: @@
 |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| |
 |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| |
-|[[spades-software|spades]]|3.15 (3.15.5)|''module load spades/3.15''| |
+|[[spades-software|spades]]|4.2.0|''module load spades/4.2.0''| |
 |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| |
 |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| |
@@ Line 380: / Line 385: @@
 |spread|1.0.6|''module load spread/1.0.6''| |
 |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| |
+|[[squirrel-software|squirrel]]|1.1.2|''module load squirrel/1.1.2''| |
 |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| |
 |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| |