Differences

This shows you the differences between two versions of the page.

--- list-of-software [2025/05/13 08:01] – aorth
+++ list-of-software [2025/05/30 07:40] (current) – aorth
@@ Line 88: / Line 88: @@
 |[[diamond-software|diamond]]|2.0.14|''module load diamond/2.0.14''| |
 |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
-|[[dorado-software|dorado]]|0.9.1|''module load dorado/0.9.1''| |
+|[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| |
+|[[dorado-software|dorado]]|0.9.5|''module load dorado/0.9.5''| |
+|[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
@@ Line 104: / Line 106: @@
 |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| |
 |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| |
-|[[fastp-software|fastp]]|0.22.0|''module load fastp/0.22.0''| |
+|[[fastp-software|fastp]]|0.24.1|''module load fastp/0.24.1''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 |[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| |
@@ Line 118: / Line 120: @@
 |[[flexbar-software|flexbar]]|2.7.0|''module load flexbar/2.7.8''| |
 |[[flux-capacitor-software|flux-capacitor]]|1.6.1|''module load flux-capacitor/1.6.1''| |
-|[[flye-software|flye]]|2.9.4|''module load flye/2.9.4''| |
+|[[flye-software|flye]]|2.9.6|''module load flye/2.9.6''| |
 |frappe|1.1|''module load frappe/1.1''| |
 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
@@ Line 133: / Line 135: @@
 |glimmer|3.02|''module load glimmer/3.02''| |
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
+|[[gofasta-software|gofasta]]|1.2.3|''module load gofasta/1.2.3''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
 |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
@@ Line 166: / Line 169: @@
 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
-|[[iqtree-software|iqtree]]|2.2.0|''module load iqtree/2.2.0''| |
+|[[iqtree-software|iqtree]]|2.4.0|''module load iqtree/2.4.0''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
@@ Line 174: / Line 177: @@
 |i-tasser|latest|''module load i-tasser/latest''| |
 |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| |
+|[[jclusterfunk-software|jclusterfunk]]|0.0.25|''module load jclusterfunk/0.0.25''| |
 |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| |
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
@@ Line 211: / Line 215: @@
 |[[mcscanx-software|mcscanx]]|git-97e74f40|''module load mcscanx/git-97e74f40''| |
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
-|[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |
+|[[medaka-software|medaka]]|1.12.1|''module load medaka/1.12.1''| |
 |[[megahit-software|megahit]]|1.2.9|''module load megahit/1.2.9''| |
 |megan|4.70.4|''module load megan/4.70.4''| |
@@ Line 234: / Line 238: @@
 |mkatari-ilri|latest|''module load mkatari-ilri/latest''| |
 |[[mlst-software|mlst]]|2.23.0|''module load mlst/2.23.0''| |
+|[[mmseqs2-software|mmseqs2]]|17-b804f|''module load mmseqs2/17-b804f''| |
 |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| |
 |[[modeltest-software|modeltest]]|0.1.7|''module load modeltest/0.1.7''| |
@@ Line 289: / Line 294: @@
 |[[pod5-software|pod5]]|0.3.2|''module load pod5/0.3.2''| |
 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
+|[[polypolish-software|polypolish]]|0.6.0|''module load polypolish/0.6.0''| |
 |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| |
 |[[porechop-software|porechop]]|0.3.2pre|''module load porechop/0.3.2pre''| |
@@ Line 314: / Line 320: @@
 |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
+|[[raven-software|raven]]|1.8.3|''module load raven/1.8.3''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
 |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| |
@@ Line 323: / Line 330: @@
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
-|[[resfinder-software|resfinder]]|4.6.0|''module load resfinder/4.6.0''| |
+|[[resfinder-software|resfinder]]|4.7.2|''module load resfinder/4.7.2''| |
 |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
@@ Line 372: / Line 379: @@
 |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| |
 |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| |
-|[[spades-software|spades]]|3.15 (3.15.5)|''module load spades/3.15''| |
+|[[spades-software|spades]]|4.2.0|''module load spades/4.2.0''| |
 |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| |
 |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| |
@@ Line 378: / Line 385: @@
 |spread|1.0.6|''module load spread/1.0.6''| |
 |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| |
+|[[squirrel-software|squirrel]]|1.1.2|''module load squirrel/1.1.2''| |
 |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| |
 |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| |