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list-of-software [2025/05/12 12:27] – aorthlist-of-software [2025/05/30 07:40] (current) – aorth
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 |[[brig-software|brig]]|0.95|''module load brig/0.95''| | |[[brig-software|brig]]|0.95|''module load brig/0.95''| |
 |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| | |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| |
-|[[bwa-software|bwa]]|0.7.18|''module load bwa/0.7.18''| |+|[[bwa-software|bwa]]|0.7.19|''module load bwa/0.7.19''| |
 |[[bwa-mem2-software|bwa-mem2]]|2.2.1|''module load bwa-mem2/2.2.1''| | |[[bwa-mem2-software|bwa-mem2]]|2.2.1|''module load bwa-mem2/2.2.1''| |
 |[[cafe-software|cafe]]|4.1|''module load cafe/4.1''| | |[[cafe-software|cafe]]|4.1|''module load cafe/4.1''| |
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 |[[diamond-software|diamond]]|2.0.14|''module load diamond/2.0.14''| | |[[diamond-software|diamond]]|2.0.14|''module load diamond/2.0.14''| |
 |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| | |[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
-|[[dorado-software|dorado]]|0.9.1|''module load dorado/0.9.1''| |+|[[dnaapler-software|dnaapler]]|1.2.0|''module load dnaapler/1.2.0''| | 
 +|[[dorado-software|dorado]]|0.9.5|''module load dorado/0.9.5''| | 
 +|[[dragonflye-software|dragonflye]]|1.2.1|''module load dragonflye/1.2.1''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| | |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| | |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
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 |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| |
 |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| | |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| |
-|[[fastp-software|fastp]]|0.22.0|''module load fastp/0.22.0''| |+|[[fastp-software|fastp]]|0.24.1|''module load fastp/0.24.1''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 |[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| | |[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| |
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 |[[flexbar-software|flexbar]]|2.7.0|''module load flexbar/2.7.8''| | |[[flexbar-software|flexbar]]|2.7.0|''module load flexbar/2.7.8''| |
 |[[flux-capacitor-software|flux-capacitor]]|1.6.1|''module load flux-capacitor/1.6.1''| | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|''module load flux-capacitor/1.6.1''| |
-|[[flye-software|flye]]|2.9.4|''module load flye/2.9.4''| |+|[[flye-software|flye]]|2.9.6|''module load flye/2.9.6''| |
 |frappe|1.1|''module load frappe/1.1''| | |frappe|1.1|''module load frappe/1.1''| |
 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| | |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
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 |glimmer|3.02|''module load glimmer/3.02''| | |glimmer|3.02|''module load glimmer/3.02''| |
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| | |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
 +|[[gofasta-software|gofasta]]|1.2.3|''module load gofasta/1.2.3''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| | |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
 |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| | |[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
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 |[[gsea-software|GSEA]]|2.2.3|''module load gsea/2.2.3''| | |[[gsea-software|GSEA]]|2.2.3|''module load gsea/2.2.3''| |
 |[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| | |[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| |
 +|[[gubbins-software|gubbins]]|3.4|''module load gubbins/3.4''| |
 |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| | |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| |
 |[[guppy-software|guppy]]|6.2.1|''module load guppy/6.2.1''| | |[[guppy-software|guppy]]|6.2.1|''module load guppy/6.2.1''| |
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 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| | |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| | |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
-|[[iqtree-software|iqtree]]|2.2.0|''module load iqtree/2.2.0''| |+|[[iqtree-software|iqtree]]|2.4.0|''module load iqtree/2.4.0''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| | |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| | |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
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 |i-tasser|latest|''module load i-tasser/latest''| | |i-tasser|latest|''module load i-tasser/latest''| |
 |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| | |[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| |
 +|[[jclusterfunk-software|jclusterfunk]]|0.0.25|''module load jclusterfunk/0.0.25''| |
 |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| | |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| |
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| | |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
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 |[[mcscanx-software|mcscanx]]|git-97e74f40|''module load mcscanx/git-97e74f40''| | |[[mcscanx-software|mcscanx]]|git-97e74f40|''module load mcscanx/git-97e74f40''| |
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| | |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
-|[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |+|[[medaka-software|medaka]]|1.12.1|''module load medaka/1.12.1''| |
 |[[megahit-software|megahit]]|1.2.9|''module load megahit/1.2.9''| | |[[megahit-software|megahit]]|1.2.9|''module load megahit/1.2.9''| |
 |megan|4.70.4|''module load megan/4.70.4''| | |megan|4.70.4|''module load megan/4.70.4''| |
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 |mkatari-ilri|latest|''module load mkatari-ilri/latest''| | |mkatari-ilri|latest|''module load mkatari-ilri/latest''| |
 |[[mlst-software|mlst]]|2.23.0|''module load mlst/2.23.0''| | |[[mlst-software|mlst]]|2.23.0|''module load mlst/2.23.0''| |
 +|[[mmseqs2-software|mmseqs2]]|17-b804f|''module load mmseqs2/17-b804f''| |
 |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| | |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| |
 |[[modeltest-software|modeltest]]|0.1.7|''module load modeltest/0.1.7''| | |[[modeltest-software|modeltest]]|0.1.7|''module load modeltest/0.1.7''| |
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 |[[pod5-software|pod5]]|0.3.2|''module load pod5/0.3.2''| | |[[pod5-software|pod5]]|0.3.2|''module load pod5/0.3.2''| |
 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| | |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
 +|[[polypolish-software|polypolish]]|0.6.0|''module load polypolish/0.6.0''| |
 |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| | |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| |
 |[[porechop-software|porechop]]|0.3.2pre|''module load porechop/0.3.2pre''| | |[[porechop-software|porechop]]|0.3.2pre|''module load porechop/0.3.2pre''| |
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 |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| | |[[rasusa-software|rasusa]]|2.1.0|''module load rasusa/2.1.0''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
 +|[[raven-software|raven]]|1.8.3|''module load raven/1.8.3''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| | |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
 |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| | |[[raxml-ng-software|raxml-ng]]|1.2.2|''module load raxml-ng/1.2.2''| |
Line 322: Line 330:
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| | |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
-|[[resfinder-software|resfinder]]|4.6.0|''module load resfinder/4.6.0''| |+|[[resfinder-software|resfinder]]|4.7.2|''module load resfinder/4.7.2''| |
 |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| | |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| | |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
Line 371: Line 379:
 |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| |
 |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| | |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| |
-|[[spades-software|spades]]|3.15 (3.15.5)|''module load spades/3.15''| |+|[[spades-software|spades]]|4.2.0|''module load spades/4.2.0''| |
 |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| | |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| |
 |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| | |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| |
Line 377: Line 385:
 |spread|1.0.6|''module load spread/1.0.6''| | |spread|1.0.6|''module load spread/1.0.6''| |
 |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| | |[[squid-software|squid]]|1.9g|''module load squid/1.9g''| |
 +|[[squirrel-software|squirrel]]|1.1.2|''module load squirrel/1.1.2''| |
 |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| | |[[sratoolkit-software|sratoolkit]]|2.10.0|''module load sratoolkit/2.10.0''| |
 |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| | |[[sra-tools-software|sra-tools]]|3.0.0|''module load sra-tools/3.0.0''| |
list-of-software.1747052864.txt.gz · Last modified: by aorth