Differences

This shows you the differences between two versions of the page.

--- list-of-software [2025/03/03 07:12] – aorth
+++ list-of-software [2025/04/28 13:02] (current) – aorth
@@ Line 34: / Line 34: @@
 |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| |
-|[[bcftools-software|bcftools]]|1.15.1|''module load bcftools/1.15.1''| |
+|[[bcftools-software|bcftools]]|1.17|''module load bcftools/1.17''| |
 |bcl2fastq|2.20.0.422|''bcl2fastq''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
@@ Line 40: / Line 40: @@
 |[[beast2-software|beast2]]|2.6.4|''module load beast2/2.6.4''| |
 |[[bedops-software|bedops]]|2.4.29|''module load bedops/2.4.29''| |
-|[[bedtools-software|bedtools]]|2.29.0|''module load bedtools/2.29.0''| |
+|[[bedtools-software|bedtools]]|2.31.1|''module load bedtools/2.31.1''| |
 |[[binpacker-software|binpacker]]|1.0|''module load binpacker/1.0''| |
 |[[bioperl-software|bioperl]]|1.7.2|''module load bioperl/1.7.2''| |
@@ Line 50: / Line 50: @@
 |[[bmtagger-software|bmtagger]]|0.3.102.4|''module load bmtagger/0.3.102.4''| |
 |[[bowtie-software|bowtie1]]|1.2.3|''module load bowtie/1.2.3''| |
-|[[bowtie2-software|bowtie2]]|2.5.0|''module load bowtie2/2.5.0''| |
+|[[bowtie2-software|bowtie2]]|2.5.4|''module load bowtie2/2.5.4''| |
 |[[brig-software|brig]]|0.95|''module load brig/0.95''| |
 |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| |
@@ Line 104: / Line 104: @@
 |[[fastp-software|fastp]]|0.22.0|''module load fastp/0.22.0''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
+|[[fastq-scan-software|fastq-scan]]|1.0.1|''module load fastq-scan/1.0.1''| |
 |[[fastqc-software|fastqc]]|0.11.9|''module load fastqc/0.11.9''| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''module load fastSTRUCTURE/1.0''| |
@@ Line 178: / Line 179: @@
 |[[karect-software|karect]]|1.0|''module load karect/1.0''| |
 |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| |
-|[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| |
+|[[kma-software|kma]]|1.4.21|''module load kma/1.4.21''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
 |[[kmerfreq-software|kmerfreq]]|git-90fca00d|''module load kmerfreq/git-90fca00d''| |
@@ Line 222: / Line 223: @@
 |[[minimac3-software|minimac3]]|2.0.1|''module load minimac3/2.0.1''| |
 |[[minimac4-software|minimac4]]|1.0.3|''module load minimac4/1.0.3''| |
-|[[minimap2-software|minimap2]]|2.24|''module load minimap2/2.24''| |
+|[[minimap2-software|minimap2]]|2.28|''module load minimap2/2.28''| |
 |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| |
 |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| |
@@ Line 314: / Line 315: @@
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
+|[[resfinder-software|resfinder]]|4.6.0|''module load resfinder/4.6.0''| |
 |[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
@@ Line 382: / Line 384: @@
 |[[tablet-software|tablet]]|1.17.08.17|''module load tablet/1.17.08.17''| |
 |[[tassel-software|tassel]]|5.2.94|''module load tassel/5.2.94''| |
+|[[taxpasta-software|taxpasta]]|0.7.0|''module load taxpasta/0.7.0''| |
 |[[tmiseq-software|tmiseq]]|2016-01-31|''module load tmiseq/2016-01-31''| |
 |[[tophat-software|tophat]]|2.1.0|''module load tophat2/2.1.0''| |