list-of-software
Differences
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| list-of-software [2025/02/28 14:01] – aorth | list-of-software [2025/04/28 13:02] (current) – aorth | ||
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| |bayescan|2.1|'' | |bayescan|2.1|'' | ||
| |[[bbmap-software|bbmap]]|38.95|'' | |[[bbmap-software|bbmap]]|38.95|'' | ||
| - | |[[bcftools-software|bcftools]]|1.15.1|'' | + | |[[bcftools-software|bcftools]]|1.17|'' |
| |bcl2fastq|2.20.0.422|'' | |bcl2fastq|2.20.0.422|'' | ||
| |[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
| Line 40: | Line 40: | ||
| |[[beast2-software|beast2]]|2.6.4|'' | |[[beast2-software|beast2]]|2.6.4|'' | ||
| |[[bedops-software|bedops]]|2.4.29|'' | |[[bedops-software|bedops]]|2.4.29|'' | ||
| - | |[[bedtools-software|bedtools]]|2.29.0|'' | + | |[[bedtools-software|bedtools]]|2.31.1|'' |
| |[[binpacker-software|binpacker]]|1.0|'' | |[[binpacker-software|binpacker]]|1.0|'' | ||
| |[[bioperl-software|bioperl]]|1.7.2|'' | |[[bioperl-software|bioperl]]|1.7.2|'' | ||
| Line 50: | Line 50: | ||
| |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | ||
| |[[bowtie-software|bowtie1]]|1.2.3|'' | |[[bowtie-software|bowtie1]]|1.2.3|'' | ||
| - | |[[bowtie2-software|bowtie2]]|2.5.0|'' | + | |[[bowtie2-software|bowtie2]]|2.5.4|'' |
| |[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
| |[[busco-software|BUSCO ]]|5.2.2|'' | |[[busco-software|BUSCO ]]|5.2.2|'' | ||
| Line 104: | Line 104: | ||
| |[[fastp-software|fastp]]|0.22.0|'' | |[[fastp-software|fastp]]|0.22.0|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| + | |[[fastq-scan-software|fastq-scan]]|1.0.1|'' | ||
| |[[fastqc-software|fastqc]]|0.11.9|'' | |[[fastqc-software|fastqc]]|0.11.9|'' | ||
| |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | ||
| Line 146: | Line 147: | ||
| |[[hclust2-software|hclust2]]|1.0.0|'' | |[[hclust2-software|hclust2]]|1.0.0|'' | ||
| |[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
| - | |[[hmmer-software|hmmer]]|3.3|'' | ||
| - | |[[hmmIBD-software|hmmIBD]]|2.0.4|'' | ||
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
| |[[hifiasm-software|hifiasm]]|0.16.1|'' | |[[hifiasm-software|hifiasm]]|0.16.1|'' | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| + | |[[hmmer-software|hmmer]]|3.3|'' | ||
| + | |[[hmmIBD-software|hmmIBD]]|2.0.4|'' | ||
| + | |[[hostile-software|hostile]]|2.0.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| - | |[[htslib-software|htslib]]|1.15.1|'' | + | |[[htslib-software|htslib]]|1.17|'' |
| |[[hypo-software|hypo]]|1.0.3|'' | |[[hypo-software|hypo]]|1.0.3|'' | ||
| |[[hyphy-software|hyphy]]|2.5.48|'' | |[[hyphy-software|hyphy]]|2.5.48|'' | ||
| Line 177: | Line 179: | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| |[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
| - | |[[kma-software|kma]]|1.4.11|'' | + | |[[kma-software|kma]]|1.4.21|'' |
| |[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
| |[[kmerfreq-software|kmerfreq]]|git-90fca00d|'' | |[[kmerfreq-software|kmerfreq]]|git-90fca00d|'' | ||
| Line 221: | Line 223: | ||
| |[[minimac3-software|minimac3]]|2.0.1|'' | |[[minimac3-software|minimac3]]|2.0.1|'' | ||
| |[[minimac4-software|minimac4]]|1.0.3|'' | |[[minimac4-software|minimac4]]|1.0.3|'' | ||
| - | |[[minimap2-software|minimap2]]|2.24|'' | + | |[[minimap2-software|minimap2]]|2.28|'' |
| |[[minpath-software|MinPath]]|1.0.2|'' | |[[minpath-software|MinPath]]|1.0.2|'' | ||
| |[[mira-software# | |[[mira-software# | ||
| Line 313: | Line 315: | ||
| |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| + | |[[resfinder-software|resfinder]]|4.6.0|'' | ||
| |[[rgi-software|rgi]]|6.0.2|'' | |[[rgi-software|rgi]]|6.0.2|'' | ||
| |[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
| Line 321: | Line 324: | ||
| |[[rseqc-software|rseqc]]|2.6.4|'' | |[[rseqc-software|rseqc]]|2.6.4|'' | ||
| |[[ruby-software|ruby]]|3.1 (3.1.4)|'' | |[[ruby-software|ruby]]|3.1 (3.1.4)|'' | ||
| - | |[[samtools-software|samtools]]|1.15.1|'' | + | |[[samtools-software|samtools]]|1.17|'' |
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| |[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
| Line 381: | Line 384: | ||
| |[[tablet-software|tablet]]|1.17.08.17|'' | |[[tablet-software|tablet]]|1.17.08.17|'' | ||
| |[[tassel-software|tassel]]|5.2.94|'' | |[[tassel-software|tassel]]|5.2.94|'' | ||
| + | |[[taxpasta-software|taxpasta]]|0.7.0|'' | ||
| |[[tmiseq-software|tmiseq]]|2016-01-31|'' | |[[tmiseq-software|tmiseq]]|2016-01-31|'' | ||
| |[[tophat-software|tophat]]|2.1.0|'' | |[[tophat-software|tophat]]|2.1.0|'' | ||
list-of-software.1740751290.txt.gz · Last modified: 2025/02/28 14:01 by aorth