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list-of-software

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list-of-software [2023/12/06 18:24] – aorthlist-of-software [2024/06/19 11:50] (current) – aorth
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 |[[artic-software|artic]]|1.2.3|''module load artic/1.2.3''| | |[[artic-software|artic]]|1.2.3|''module load artic/1.2.3''| |
 |[[artic-tools-software|artic-tools]]|0.3.1|''module load artic-tools/0.3.1''| | |[[artic-tools-software|artic-tools]]|0.3.1|''module load artic-tools/0.3.1''| |
 +|[[aspera-cli-software|aspera-cli]]|4.15.0|''module load aspera-cli/4.15.0''| |
 |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| | |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| |
 |[[awscli-software|awscli]]|2.4.0|''module load awscli/2''| | |[[awscli-software|awscli]]|2.4.0|''module load awscli/2''| |
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 |mkatari-ilri|latest|''module load mkatari-ilri/latest''| | |mkatari-ilri|latest|''module load mkatari-ilri/latest''| |
 |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| | |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| |
 +|[[modeltest-software|modeltest]]|0.1.7|''module load modeltest/0.1.7''| |
 |[[mosdepth-software|mosdepth]]|0.2.9|''module load mosdepth/0.2.9''| | |[[mosdepth-software|mosdepth]]|0.2.9|''module load mosdepth/0.2.9''| |
 |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| | |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| |
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 |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| | |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|23.10 (23.10.0)|''module load nextflow/23.10''| |+|[[nextflow-software|nextflow]]|24.04 (24.04.2)|''module load nextflow/24.04''| |
 |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| | |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
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 |[[rsem-software|RSEM]]|1.3.1|''module load RSEM/1.3.1''| | |[[rsem-software|RSEM]]|1.3.1|''module load RSEM/1.3.1''| |
 |[[rseqc-software|rseqc]]|2.6.4|''module load rseqc/2.6.4''| | |[[rseqc-software|rseqc]]|2.6.4|''module load rseqc/2.6.4''| |
-|[[ruby-software|ruby]]|2.2.3|''module load ruby/2.2.3''| |+|[[ruby-software|ruby]]|3.1 (3.1.4)|''module load ruby/3.1''| |
 |[[samtools-software|samtools]]|1.15.1|''module load samtools/1.15.1''| | |[[samtools-software|samtools]]|1.15.1|''module load samtools/1.15.1''| |
 |[[sailfish-software|sailfish]]|0.9.2|''module load sailfish/0.9.2''| | |[[sailfish-software|sailfish]]|0.9.2|''module load sailfish/0.9.2''| |
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 |[[transdecoder-software|TransDecoder]]|2.0.1|''module load TransDecoder/2.0.1''|  | |[[transdecoder-software|TransDecoder]]|2.0.1|''module load TransDecoder/2.0.1''|  |
 |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  | |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  |
 +|[[treetime-software|treetime]]|0.11.3|''module load treetime/0.11.3''|  |
 |[[trf-software|trf]]|4.0.9|''module load trf/4.0.9''| | |[[trf-software|trf]]|4.0.9|''module load trf/4.0.9''| |
 |[[trimgalore-software|trimgalore]]|0.6.7|''module load trimgalore/0.6.7''| | |[[trimgalore-software|trimgalore]]|0.6.7|''module load trimgalore/0.6.7''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth