list-of-software
Differences
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| list-of-software [2023/11/08 11:45] – aorth | list-of-software [2024/05/15 09:52] – aorth | ||
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| |[[artic-software|artic]]|1.2.3|'' | |[[artic-software|artic]]|1.2.3|'' | ||
| |[[artic-tools-software|artic-tools]]|0.3.1|'' | |[[artic-tools-software|artic-tools]]|0.3.1|'' | ||
| + | |[[aspera-cli-software|aspera-cli]]|4.15.0|'' | ||
| |[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
| |[[awscli-software|awscli]]|2.4.0|'' | |[[awscli-software|awscli]]|2.4.0|'' | ||
| Line 83: | Line 84: | ||
| |[[diamond-software|diamond]]|2.0.14|'' | |[[diamond-software|diamond]]|2.0.14|'' | ||
| |[[disty-software|disty]]|0.1.0|'' | |[[disty-software|disty]]|0.1.0|'' | ||
| - | |[[dorado-software|dorado]]|0.3.4|'' | + | |[[dorado-software|dorado]]|0.5.0|'' |
| |[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
| |[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
| Line 224: | Line 225: | ||
| |mkatari-ilri|latest|'' | |mkatari-ilri|latest|'' | ||
| |[[modeller-software|modeller]]|9.17|'' | |[[modeller-software|modeller]]|9.17|'' | ||
| + | |[[modeltest-software|modeltest]]|0.1.7|'' | ||
| |[[mosdepth-software|mosdepth]]|0.2.9|'' | |[[mosdepth-software|mosdepth]]|0.2.9|'' | ||
| |[[mothur-software|mothur]]|1.44.1|'' | |[[mothur-software|mothur]]|1.44.1|'' | ||
| Line 233: | Line 235: | ||
| |[[mummer-software|mummer]]|4.0.0rc1|'' | |[[mummer-software|mummer]]|4.0.0rc1|'' | ||
| |[[nanopolish-software|nanopolish]]|0.14.0|'' | |[[nanopolish-software|nanopolish]]|0.14.0|'' | ||
| + | |[[nanoqc-software|nanoqc]]|git-a7bcbdce|'' | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| |[[nextalign-software|nextalign]]|1.11.0|'' | |[[nextalign-software|nextalign]]|1.11.0|'' | ||
| Line 272: | Line 275: | ||
| |[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
| |[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
| + | |[[pod5-software|pod5]]|0.3.2|'' | ||
| |[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
| |[[poplddecay-software|poplddecay]]|3.41|'' | |[[poplddecay-software|poplddecay]]|3.41|'' | ||
| Line 311: | Line 315: | ||
| |[[rsem-software|RSEM]]|1.3.1|'' | |[[rsem-software|RSEM]]|1.3.1|'' | ||
| |[[rseqc-software|rseqc]]|2.6.4|'' | |[[rseqc-software|rseqc]]|2.6.4|'' | ||
| - | |[[ruby-software|ruby]]|2.2.3|'' | + | |[[ruby-software|ruby]]|3.1 (3.1.4)|'' |
| |[[samtools-software|samtools]]|1.15.1|'' | |[[samtools-software|samtools]]|1.15.1|'' | ||
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| Line 365: | Line 369: | ||
| |[[structure-software|structure]]|2.3.4|'' | |[[structure-software|structure]]|2.3.4|'' | ||
| |[[stringtie-software|stringtie]]|1.3.4d|'' | |[[stringtie-software|stringtie]]|1.3.4d|'' | ||
| - | |[[stringtie2-software|stringtie2]]|2.0.1|'' | + | |[[stringtie2-software|stringtie2]]|2.2.1|'' |
| |[[subread-software|subread]]|1.6.2|'' | |[[subread-software|subread]]|1.6.2|'' | ||
| |svmlight|V6.02|'' | |svmlight|V6.02|'' | ||
| Line 377: | Line 381: | ||
| |[[transdecoder-software|TransDecoder]]|2.0.1|'' | |[[transdecoder-software|TransDecoder]]|2.0.1|'' | ||
| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
| + | |[[treetime-software|treetime]]|0.11.3|'' | ||
| |[[trf-software|trf]]|4.0.9|'' | |[[trf-software|trf]]|4.0.9|'' | ||
| |[[trimgalore-software|trimgalore]]|0.6.7|'' | |[[trimgalore-software|trimgalore]]|0.6.7|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth