list-of-software
Differences
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list-of-software [2023/09/13 06:06] – aorth | list-of-software [2023/10/26 07:45] – aorth | ||
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|[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
|[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
- | |[[blast-software|blast]]|2.12.0+|'' | + | |[[blast-software|blast]]|2.14.1+|'' |
|[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
|[[blat-software|blat]]|37x1|'' | |[[blat-software|blat]]|37x1|'' | ||
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|[[cd-hit-software|cd-hit]]|4.8.1|'' | |[[cd-hit-software|cd-hit]]|4.8.1|'' | ||
|[[cegma-software|cegma]]|v2.5|'' | |[[cegma-software|cegma]]|v2.5|'' | ||
+ | |[[cgmlst-dists-software|cgmlst-dists]]|0.4.0|'' | ||
|celera-wgs|6.1|'' | |celera-wgs|6.1|'' | ||
|censor|4.2.28|'' | |censor|4.2.28|'' | ||
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|[[changeo-software|changeo]]|1.2.0|'' | |[[changeo-software|changeo]]|1.2.0|'' | ||
|[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
- | |[[chewbbaca-software|chewbbaca]]|3.2.0|'' | + | |[[chewbbaca-software|chewbbaca]]|git-87102063|'' |
|[[circos-software|circos]]|0.69-9|'' | |[[circos-software|circos]]|0.69-9|'' | ||
|[[clonalframe-software|clonalframe]]|1.2|'' | |[[clonalframe-software|clonalframe]]|1.2|'' | ||
|[[clonalframeml-software|clonalframeml]]|1.0|'' | |[[clonalframeml-software|clonalframeml]]|1.0|'' | ||
- | |[[clustalo-software|clustalo]]|1.2.3|'' | ||
|clustalw|2.1|'' | |clustalw|2.1|'' | ||
|[[cnvnator-software|CNVnator]]|0.3.3|'' | |[[cnvnator-software|CNVnator]]|0.3.3|'' | ||
Line 227: | Line 227: | ||
|[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | |[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | ||
|mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
- | |[[mrbays-software|mrbayes]]|3.2.7a|'' | + | |[[mrbayes-software|mrbayes]]|3.2.7a|'' |
|[[multiqc-software|multiqc]]|1.12|'' | |[[multiqc-software|multiqc]]|1.12|'' | ||
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
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|[[nextclade-software|nextclade]]|2.11.0|'' | |[[nextclade-software|nextclade]]|2.11.0|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|23.04 (23.04.2)|'' | + | |[[nextflow-software|nextflow]]|23.10 (23.10.0)|'' |
|[[ngs-tools-software|ngs-tools]]|3.0.0|'' | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
Line 242: | Line 242: | ||
|[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
|[[nQuire-software|nQuire]]|git-a990a88e|'' | |[[nQuire-software|nQuire]]|git-a990a88e|'' | ||
- | |[[nvtop-software|nvtop]]|2.0.2|'' | ||
|novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
|[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
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|[[rgi-software|rgi]]|6.0.2|'' | |[[rgi-software|rgi]]|6.0.2|'' | ||
|[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
+ | |[[roary-software|roary]]|3.13.0|'' | ||
|[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
|[[rrnaselector-software|rRNASelector]]|1.1|'' | |[[rrnaselector-software|rRNASelector]]|1.1|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth