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list-of-software [2023/08/10 07:49] aorthlist-of-software [2023/09/28 09:58] aorth
Line 65: Line 65:
 |[[changeo-software|changeo]]|1.2.0|''module load changeo/1.2.0''| | |[[changeo-software|changeo]]|1.2.0|''module load changeo/1.2.0''| |
 |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| | |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
 +|[[chewbbaca-software|chewbbaca]]|git-87102063|''module load chewbbaca/git-87102063''| |
 |[[circos-software|circos]]|0.69-9|''module load circos/0.69-9''| | |[[circos-software|circos]]|0.69-9|''module load circos/0.69-9''| |
 |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| | |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| |
 |[[clonalframeml-software|clonalframeml]]|1.0|''module load clonalframeml/1.0''| | |[[clonalframeml-software|clonalframeml]]|1.0|''module load clonalframeml/1.0''| |
-|[[clustalo-software|clustalo]]|1.2.3|''module load clustalo/1.2.3''| | 
 |clustalw|2.1|''module load clustalw/2.1''| | |clustalw|2.1|''module load clustalw/2.1''| |
 |[[cnvnator-software|CNVnator]]|0.3.3|''module load CNVnator/0.3.3''| | |[[cnvnator-software|CNVnator]]|0.3.3|''module load CNVnator/0.3.3''| |
Line 81: Line 81:
 |dendroscope|2.7.4|''module load dendroscope/2.7.4''| | |dendroscope|2.7.4|''module load dendroscope/2.7.4''| |
 |[[diamond-software|diamond]]|2.0.14|''module load diamond/2.0.14''| | |[[diamond-software|diamond]]|2.0.14|''module load diamond/2.0.14''| |
 +|[[disty-software|disty]]|0.1.0|''module load disty/0.1.0''| |
 +|[[dorado-software|dorado]]|0.3.4|''module load dorado/0.3.4''| |
 |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| | |[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| | |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
Line 102: Line 104:
 |[[fasttree-software|fasttree]]|2.1.11|''module load fasttree/2.1.11''| | |[[fasttree-software|fasttree]]|2.1.11|''module load fasttree/2.1.11''| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''module load fastx_toolkit/0.0.13''| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''module load fastx_toolkit/0.0.13''| |
 +|[[figaro-software|figaro]]|git-337aa9|''module load figaro/git-337aa9''| |
 |figtree|1.4.0|''module load figtree/1.4.0''| | |figtree|1.4.0|''module load figtree/1.4.0''| |
 |[[flapjack-software|flapjack ]]|1.18.04.23-beta|''module load flapjack/1.18.04.23-beta''| | |[[flapjack-software|flapjack ]]|1.18.04.23-beta|''module load flapjack/1.18.04.23-beta''| |
Line 185: Line 188:
 |[[ltr_retriever-software|ltr_retriever]]|2.9.0|''module load ltr_retriever/2.9.0''| | |[[ltr_retriever-software|ltr_retriever]]|2.9.0|''module load ltr_retriever/2.9.0''| |
 |lucy|1.19p|''module load lucy/1.19p''| | |lucy|1.19p|''module load lucy/1.19p''| |
-|[[mafft-software|mafft]]|7.475|''module load mafft/7.475''| |+|[[mafft-software|mafft]]|7.505|''module load mafft/7.505''| |
 |[[maker-software|maker]]|3.01.03|''module load maker/3.01.03''| | |[[maker-software|maker]]|3.01.03|''module load maker/3.01.03''| |
 |[[mapsplice-software|mapsplice]]|2.2.0|''module load mapsplice/2.2.0''| | |[[mapsplice-software|mapsplice]]|2.2.0|''module load mapsplice/2.2.0''| |
Line 223: Line 226:
 |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| | |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| |
 |mpiblast|1.6.0|''module load mpiblast/1.6.0''| | |mpiblast|1.6.0|''module load mpiblast/1.6.0''| |
-|mrbayes|3.2.2|''module load mrbayes/3.2.2''| |+|[[mrbayes-software|mrbayes]]|3.2.7a|''module load mrbayes/3.2.7a''| |
 |[[multiqc-software|multiqc]]|1.12|''module load multiqc/1.12''| | |[[multiqc-software|multiqc]]|1.12|''module load multiqc/1.12''| |
 |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551'' | |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth