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list-of-software

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list-of-software [2023/06/26 12:06] – aorthlist-of-software [2023/08/08 06:58] – aorth
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 |[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| | |[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| | |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
 +|[[kmerfreq-software|kmerfreq]]|git-90fca00d|''module load kmerfreq/git-90fca00d''| |
 |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| | |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| |
 |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|''module load kmer-ssr/git-4043c0e7''| | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|''module load kmer-ssr/git-4043c0e7''| |
Line 203: Line 204:
 |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| | |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| |
 |[[metaeuk-software|metaeuk]]|git-9818d1a5|''module load metaeuk/git-9818d1a5''| | |[[metaeuk-software|metaeuk]]|git-9818d1a5|''module load metaeuk/git-9818d1a5''| |
-|[[metaphlan-software|metaphlan]]|3.0.13|''module load metaphlan/3.0.13''| |+|[[metaphlan-software|metaphlan]]|4.0.6|''module load metaphlan/4.0.6''| |
 |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| | |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| |
 |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| | |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| |
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 |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| | |[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|22.10 (22.10.8)|''module load nextflow/22.10''| |+|[[nextflow-software|nextflow]]|23.04 (23.04.2)|''module load nextflow/23.04''| |
 |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| | |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
Line 263: Line 264:
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| | |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| | |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
-|[[plasmidid-software|plasmidid]]|1.6.3|''module load plasmidid/1.6.3''| |+|[[plasmidid-software|plasmidid]]|1.6.5|''module load plasmidid/1.6.5''| |
 |[[platanus-software|platanus]]|1.2.1|''module load platanus/1.2.1''| | |[[platanus-software|platanus]]|1.2.1|''module load platanus/1.2.1''| |
 |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| | |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| |
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 |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| | |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| |
 |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| | |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| |
-|[[r-software|R]]|4.3.0|''module load R/4.3''| |+|[[r-software|R]]|4.3.1|''module load R/4.3''| |
 |[[racon-software|racon]]|1.5.0|''module load racon/1.5.0''| | |[[racon-software|racon]]|1.5.0|''module load racon/1.5.0''| |
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| | |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
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 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| | |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
 |[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| | |[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| |
 +|[[shapeit-software|shapeit]]|2.904|''module load shapeit/2.904''| |
 |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| | |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
 |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| | |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| |
Line 329: Line 331:
 |[[snakemake-software|snakemake]]|6.15.5|''module load snakemake/6.15''| | |[[snakemake-software|snakemake]]|6.15.5|''module load snakemake/6.15''| |
 |[[sniffles-software|sniffles]]|1.0.12b|''module load sniffles/1.0.12b''| | |[[sniffles-software|sniffles]]|1.0.12b|''module load sniffles/1.0.12b''| |
 +|[[snippy-software|snippy]]|4.6.0|''module load snippy/4.6.0''| |
 |snowhite|1.1.4|''module load snowhite/1.1.4''| | |snowhite|1.1.4|''module load snowhite/1.1.4''| |
 |[[snpeff-software|snpeff]]|5.1|''module load snpeff/5.1''| | |[[snpeff-software|snpeff]]|5.1|''module load snpeff/5.1''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth