list-of-software
Differences
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| list-of-software [2023/06/12 17:38] – aorth | list-of-software [2023/09/05 07:21] – aorth | ||
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| |[[fasttree-software|fasttree]]|2.1.11|'' | |[[fasttree-software|fasttree]]|2.1.11|'' | ||
| |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|'' | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|'' | ||
| + | |[[figaro-software|figaro]]|git-337aa9|'' | ||
| |figtree|1.4.0|'' | |figtree|1.4.0|'' | ||
| |[[flapjack-software|flapjack ]]|1.18.04.23-beta|'' | |[[flapjack-software|flapjack ]]|1.18.04.23-beta|'' | ||
| Line 171: | Line 172: | ||
| |[[kma-software|kma]]|1.4.11|'' | |[[kma-software|kma]]|1.4.11|'' | ||
| |[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
| + | |[[kmerfreq-software|kmerfreq]]|git-90fca00d|'' | ||
| |[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
| |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
| Line 190: | Line 192: | ||
| |[[marginpolish-software|marginpolish]]|1.0.0|'' | |[[marginpolish-software|marginpolish]]|1.0.0|'' | ||
| |[[mash-software|mash]]|2.2|'' | |[[mash-software|mash]]|2.2|'' | ||
| - | |[[masurca-software|masurca]]|3.3.1|'' | + | |[[masurca-software|masurca]]|4.1.0|'' |
| |mauve|2.3.1|'' | |mauve|2.3.1|'' | ||
| |[[maxbin2-software|maxbin2]]|2.2.7|'' | |[[maxbin2-software|maxbin2]]|2.2.7|'' | ||
| Line 203: | Line 205: | ||
| |[[metabat-software|metabat]]|2.12.1|'' | |[[metabat-software|metabat]]|2.12.1|'' | ||
| |[[metaeuk-software|metaeuk]]|git-9818d1a5|'' | |[[metaeuk-software|metaeuk]]|git-9818d1a5|'' | ||
| - | |[[metaphlan-software|metaphlan]]|3.0.13|'' | + | |[[metaphlan-software|metaphlan]]|4.0.6|'' |
| |[[metis-software|metis]]|5.1.0|'' | |[[metis-software|metis]]|5.1.0|'' | ||
| |[[migec-software|migec]]|1.2.4a|'' | |[[migec-software|migec]]|1.2.4a|'' | ||
| Line 231: | Line 233: | ||
| |[[nextclade-software|nextclade]]|2.11.0|'' | |[[nextclade-software|nextclade]]|2.11.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|22.10 (22.10.8)|'' | + | |[[nextflow-software|nextflow]]|23.04 (23.04.2)|'' |
| |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| Line 248: | Line 250: | ||
| |[[pairfq-software|pairfq]]|0.14.4|'' | |[[pairfq-software|pairfq]]|0.14.4|'' | ||
| |[[paml-software|paml]]|4.9a|'' | |[[paml-software|paml]]|4.9a|'' | ||
| + | |[[panaroo-software|panaroo]]|1.3.3|'' | ||
| |[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
| |[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
| Line 263: | Line 266: | ||
| |[[picrust-software# | |[[picrust-software# | ||
| |[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
| - | |[[plasmidid-software|plasmidid]]|1.6.3|'' | + | |[[plasmidid-software|plasmidid]]|1.6.5|'' |
| |[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
| |[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
| Line 279: | Line 282: | ||
| |[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
| |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | ||
| - | |[[python-software|python]]|3.9.14|'' | + | |[[python-software|python]]|3.9.17|'' |
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| |[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
| Line 286: | Line 289: | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| - | |[[r-software|R]]|4.3.0|'' | + | |[[r-software|R]]|4.3.1|'' |
| |[[racon-software|racon]]|1.5.0|'' | |[[racon-software|racon]]|1.5.0|'' | ||
| |[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
| Line 321: | Line 324: | ||
| |[[shannon-software|shannon]]|0.0.2|'' | |[[shannon-software|shannon]]|0.0.2|'' | ||
| |[[shannon_cpp-software|shannon_cpp]]|0.5.0|'' | |[[shannon_cpp-software|shannon_cpp]]|0.5.0|'' | ||
| + | |[[shapeit-software|shapeit]]|2.904|'' | ||
| |[[shasta-software|shasta]]|0.4.0|'' | |[[shasta-software|shasta]]|0.4.0|'' | ||
| |[[sickle-software|sickle]]|1.33|'' | |[[sickle-software|sickle]]|1.33|'' | ||
| Line 329: | Line 333: | ||
| |[[snakemake-software|snakemake]]|6.15.5|'' | |[[snakemake-software|snakemake]]|6.15.5|'' | ||
| |[[sniffles-software|sniffles]]|1.0.12b|'' | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
| + | |[[snippy-software|snippy]]|4.6.0|'' | ||
| |snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
| |[[snpeff-software|snpeff]]|5.1|'' | |[[snpeff-software|snpeff]]|5.1|'' | ||
| Line 348: | Line 353: | ||
| |[[sra-tools-software|sra-tools]]|3.0.0|'' | |[[sra-tools-software|sra-tools]]|3.0.0|'' | ||
| |[[srprism-software|srprism]]|3.1.2|'' | |[[srprism-software|srprism]]|3.1.2|'' | ||
| + | |[[srst2-software|srst2]]|git-73f885f5|'' | ||
| |[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
| |[[sspace-longread-software|sspace-longread]]|1.1|'' | |[[sspace-longread-software|sspace-longread]]|1.1|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth