ILRI Research Computing

User Tools

Site Tools

You are here: start » list-of-software
list-of-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
list-of-software [2023/06/12 13:17] – aorthlist-of-software [2023/07/19 08:37] – aorth
Line 171: Line 171:
 |[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| | |[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| | |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
 +|[[kmerfreq-software|kmerfreq]]|git-90fca00d|''module load kmerfreq/git-90fca00d''| |
 |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| | |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| |
 |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|''module load kmer-ssr/git-4043c0e7''| | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|''module load kmer-ssr/git-4043c0e7''| |
Line 190: Line 191:
 |[[marginpolish-software|marginpolish]]|1.0.0|''module load marginpolish/1.0.0''| | |[[marginpolish-software|marginpolish]]|1.0.0|''module load marginpolish/1.0.0''| |
 |[[mash-software|mash]]|2.2|''module load mash/2.2''| | |[[mash-software|mash]]|2.2|''module load mash/2.2''| |
-|[[masurca-software|masurca]]|3.3.1|''module load masurca/3.3.1''| |+|[[masurca-software|masurca]]|4.1.0|''module load masurca/4.1.0''| |
 |mauve|2.3.1|''module load mauve/2.3.1''| | |mauve|2.3.1|''module load mauve/2.3.1''| |
 |[[maxbin2-software|maxbin2]]|2.2.7|''module load maxbin2/2.2.7''| | |[[maxbin2-software|maxbin2]]|2.2.7|''module load maxbin2/2.2.7''| |
Line 203: Line 204:
 |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| | |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| |
 |[[metaeuk-software|metaeuk]]|git-9818d1a5|''module load metaeuk/git-9818d1a5''| | |[[metaeuk-software|metaeuk]]|git-9818d1a5|''module load metaeuk/git-9818d1a5''| |
-|[[metaphlan-software|metaphlan]]|3.0.13|''module load metaphlan/3.0.13''| |+|[[metaphlan-software|metaphlan]]|4.0.6|''module load metaphlan/4.0.6''| |
 |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| | |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| |
 |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| | |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| |
Line 263: Line 264:
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| | |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| | |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
-|[[plasmidid-software|plasmidid]]|1.6.3|''module load plasmidid/1.6.3''| |+|[[plasmidid-software|plasmidid]]|1.6.5|''module load plasmidid/1.6.5''| |
 |[[platanus-software|platanus]]|1.2.1|''module load platanus/1.2.1''| | |[[platanus-software|platanus]]|1.2.1|''module load platanus/1.2.1''| |
 |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| | |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| |
Line 279: Line 280:
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
 |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| |
-|[[python-software|python]]|3.9.14|''module load python/3.9''| |+|[[python-software|python]]|3.9.17|''module load python/3.9''| |
 |qdd|3_beta|''module load qdd/3_beta''| | |qdd|3_beta|''module load qdd/3_beta''| |
 |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| | |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| |
Line 286: Line 287:
 |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| | |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| |
 |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| | |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| |
-|[[r-software|R]]|4.3.0|''module load R/4.3''| | +|[[r-software|R]]|4.3.1|''module load R/4.3''| | 
-|[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |+|[[racon-software|racon]]|1.5.0|''module load racon/1.5.0''| |
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| | |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
Line 321: Line 322:
 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| | |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
 |[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| | |[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| |
 +|[[shapeit-software|shapeit]]|2.904|''module load shapeit/2.904''| |
 |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| | |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
 |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| | |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| |
Line 329: Line 331:
 |[[snakemake-software|snakemake]]|6.15.5|''module load snakemake/6.15''| | |[[snakemake-software|snakemake]]|6.15.5|''module load snakemake/6.15''| |
 |[[sniffles-software|sniffles]]|1.0.12b|''module load sniffles/1.0.12b''| | |[[sniffles-software|sniffles]]|1.0.12b|''module load sniffles/1.0.12b''| |
 +|[[snippy-software|snippy]]|4.6.0|''module load snippy/4.6.0''| |
 |snowhite|1.1.4|''module load snowhite/1.1.4''| | |snowhite|1.1.4|''module load snowhite/1.1.4''| |
-|[[snpeff-software|SnpEff & SnpSift]]|4.1g|''module load snpeff/4.1g''| |+|[[snpeff-software|snpeff]]|5.1|''module load snpeff/5.1''| |
 |[[snpmeta-software|snpmeta]]|2.0|''module load snpmeta/2.0''| | |[[snpmeta-software|snpmeta]]|2.0|''module load snpmeta/2.0''| |
 |[[snp-pipeline-software|snp-pipeline]]|1.0.1|''module load snp-pipeline/1.0.1''| | |[[snp-pipeline-software|snp-pipeline]]|1.0.1|''module load snp-pipeline/1.0.1''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth