list-of-software
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list-of-software [2023/05/11 09:58] – aorth | list-of-software [2023/06/26 14:44] – aorth | ||
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|[[angsd-software|angsd]]|0.910|'' | |[[angsd-software|angsd]]|0.910|'' | ||
|[[annovar-software|annovar]]|2016-02-01|'' | |[[annovar-software|annovar]]|2016-02-01|'' | ||
+ | |[[antismash-software|antismash]]|7.0.0|'' | ||
|[[any2fasta-software|any2fasta]]|0.4.2|'' | |[[any2fasta-software|any2fasta]]|0.4.2|'' | ||
|apt|1.14.3|'' | |apt|1.14.3|'' | ||
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|[[marginpolish-software|marginpolish]]|1.0.0|'' | |[[marginpolish-software|marginpolish]]|1.0.0|'' | ||
|[[mash-software|mash]]|2.2|'' | |[[mash-software|mash]]|2.2|'' | ||
- | |[[masurca-software|masurca]]|3.3.1|'' | + | |[[masurca-software|masurca]]|4.1.0|'' |
|mauve|2.3.1|'' | |mauve|2.3.1|'' | ||
|[[maxbin2-software|maxbin2]]|2.2.7|'' | |[[maxbin2-software|maxbin2]]|2.2.7|'' | ||
Line 262: | Line 263: | ||
|[[picrust-software# | |[[picrust-software# | ||
|[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
- | |[[plasmidid-software|plasmidid]]|1.6.3|'' | + | |[[plasmidid-software|plasmidid]]|1.6.5|'' |
|[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
|[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
Line 278: | Line 279: | ||
|[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
|[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | ||
- | |[[python-software|python]]|3.9.14|'' | + | |[[python-software|python]]|3.9.17|'' |
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
Line 285: | Line 286: | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
- | |[[r-software|R]]|4.2.0|'' | + | |[[r-software|R]]|4.3.0|'' |
- | |[[racon-software|racon]]|1.3.1|'' | + | |[[racon-software|racon]]|1.5.0|'' |
|[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
|[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
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|[[sniffles-software|sniffles]]|1.0.12b|'' | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
|snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
- | |[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | + | |[[snpeff-software|snpeff]]|5.1|'' |
|[[snpmeta-software|snpmeta]]|2.0|'' | |[[snpmeta-software|snpmeta]]|2.0|'' | ||
|[[snp-pipeline-software|snp-pipeline]]|1.0.1|'' | |[[snp-pipeline-software|snp-pipeline]]|1.0.1|'' | ||
Line 373: | Line 374: | ||
|[[twinscan-software|twinscan]]|3.5|'' | |[[twinscan-software|twinscan]]|3.5|'' | ||
|[[umi-tools-software|umi-tools]]| 0.2.3 |'' | |[[umi-tools-software|umi-tools]]| 0.2.3 |'' | ||
- | |[[unicycler-software|unicycler]]| 0.4.7 |'' | + | |[[unicycler-software|unicycler]]| 0.4.0 |'' |
|[[usearch-software|usearch]]| v7.0.1090 |'' | |[[usearch-software|usearch]]| v7.0.1090 |'' | ||
|varscan|2.4.2|'' | |varscan|2.4.2|'' | ||
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|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
|[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | |[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | ||
- | |[[vep-software|vep]]|92.1|'' | + | |[[vep-software|vep]]|109.3|'' |
|[[vg-software|vg]]|1.27.0|'' | |[[vg-software|vg]]|1.27.0|'' | ||
|[[viennarna-software|viennarna]]|2.4.14|'' | |[[viennarna-software|viennarna]]|2.4.14|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth