list-of-software
Differences
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| list-of-software [2023/03/02 11:09] – aorth | list-of-software [2023/06/12 17:38] – aorth | ||
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| |[[angsd-software|angsd]]|0.910|'' | |[[angsd-software|angsd]]|0.910|'' | ||
| |[[annovar-software|annovar]]|2016-02-01|'' | |[[annovar-software|annovar]]|2016-02-01|'' | ||
| + | |[[antismash-software|antismash]]|7.0.0|'' | ||
| |[[any2fasta-software|any2fasta]]|0.4.2|'' | |[[any2fasta-software|any2fasta]]|0.4.2|'' | ||
| |apt|1.14.3|'' | |apt|1.14.3|'' | ||
| Line 111: | Line 112: | ||
| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| |[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
| - | |[[funannotate-software|funannotate]]|1.8.11|See software page| | | + | |[[funannotate-software|funannotate]]|1.8.15|See software page| | |
| |[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
| - | |[[gatk-software|gatk]]|4.3.0.0|'' | + | |[[gatk-software|gatk]]|4.4.0.0|'' |
| |[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
| |[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
| Line 230: | Line 231: | ||
| |[[nextclade-software|nextclade]]|2.11.0|'' | |[[nextclade-software|nextclade]]|2.11.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' | + | |[[nextflow-software|nextflow]]|22.10 (22.10.8)|'' |
| |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| Line 285: | Line 286: | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| - | |[[r-software|R]]|4.2.0|'' | + | |[[r-software|R]]|4.3.0|'' |
| - | |[[racon-software|racon]]|1.3.1|'' | + | |[[racon-software|racon]]|1.5.0|'' |
| |[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
| |[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
| Line 329: | Line 330: | ||
| |[[sniffles-software|sniffles]]|1.0.12b|'' | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
| |snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
| - | |[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | + | |[[snpeff-software|snpeff]]|5.1|'' |
| |[[snpmeta-software|snpmeta]]|2.0|'' | |[[snpmeta-software|snpmeta]]|2.0|'' | ||
| |[[snp-pipeline-software|snp-pipeline]]|1.0.1|'' | |[[snp-pipeline-software|snp-pipeline]]|1.0.1|'' | ||
| Line 373: | Line 374: | ||
| |[[twinscan-software|twinscan]]|3.5|'' | |[[twinscan-software|twinscan]]|3.5|'' | ||
| |[[umi-tools-software|umi-tools]]| 0.2.3 |'' | |[[umi-tools-software|umi-tools]]| 0.2.3 |'' | ||
| - | |[[unicycler-software|unicycler]]| 0.4.7 |'' | + | |[[unicycler-software|unicycler]]| 0.4.0 |'' |
| |[[usearch-software|usearch]]| v7.0.1090 |'' | |[[usearch-software|usearch]]| v7.0.1090 |'' | ||
| |varscan|2.4.2|'' | |varscan|2.4.2|'' | ||
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| |[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
| |[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | |[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | ||
| - | |[[vep-software|vep]]|92.1|'' | + | |[[vep-software|vep]]|109.3|'' |
| |[[vg-software|vg]]|1.27.0|'' | |[[vg-software|vg]]|1.27.0|'' | ||
| |[[viennarna-software|viennarna]]|2.4.14|'' | |[[viennarna-software|viennarna]]|2.4.14|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth