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list-of-software

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list-of-software [2023/02/20 12:19] – aorthlist-of-software [2023/05/11 09:58] – aorth
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 |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| | |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| |
 |[[artemis-software|artemis]]|16.0.0|''module load act/16.0.0''| | |[[artemis-software|artemis]]|16.0.0|''module load act/16.0.0''| |
 +|[[artic-software|artic]]|1.2.3|''module load artic/1.2.3''| |
 |[[artic-tools-software|artic-tools]]|0.3.1|''module load artic-tools/0.3.1''| | |[[artic-tools-software|artic-tools]]|0.3.1|''module load artic-tools/0.3.1''| |
 |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| | |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| |
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 |bayescan|2.1|''module load bayescan/2.1''| | |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| | |[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| |
-|[[bcftools-software|bcftools]]|1.13|''module load bcftools/1.13''| |+|[[bcftools-software|bcftools]]|1.15.1|''module load bcftools/1.15.1''| |
 |bcl2fastq|2.20.0.422|''bcl2fastq''| | |bcl2fastq|2.20.0.422|''bcl2fastq''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| | |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
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 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| | |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
 |[[freebayes-software|freebayes]]|1.3.4|''module load freebayes/1.3.4''| | |[[freebayes-software|freebayes]]|1.3.4|''module load freebayes/1.3.4''| |
-|[[funannotate-software|funannotate]]|1.8.11|See software page| |+|[[funannotate-software|funannotate]]|1.8.15|See software page| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| | |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
-|[[gatk-software|gatk]]|4.3.0.0|''module load gatk/4.3.0.0''| |+|[[gatk-software|gatk]]|4.4.0.0|''module load gatk/4.4.0.0''| |
 |[[gapfiller-software|gapfiller]]|1.10|''module load gapfiller/1.10''| | |[[gapfiller-software|gapfiller]]|1.10|''module load gapfiller/1.10''| |
 |[[geneid-software|geneid]]|1.4.4|''module load geneid/1.4.4''| | |[[geneid-software|geneid]]|1.4.4|''module load geneid/1.4.4''| |
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 |[[htslib-software|htslib]]|1.15.1|''module load htslib/1.15.1''| | |[[htslib-software|htslib]]|1.15.1|''module load htslib/1.15.1''| |
 |[[hypo-software|hypo]]|1.0.3|''module load hypo/1.0.3''| | |[[hypo-software|hypo]]|1.0.3|''module load hypo/1.0.3''| |
 +|[[hyphy-software|hyphy]]|2.5.48|''module load hyphy/2.5.48''| |
 |[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| | |[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| |
 |[[igblast-software|igblast]]|1.10.0|''module load igblast/1.10.0''| | |[[igblast-software|igblast]]|1.10.0|''module load igblast/1.10.0''| |
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 |[[minimac3-software|minimac3]]|2.0.1|''module load minimac3/2.0.1''| | |[[minimac3-software|minimac3]]|2.0.1|''module load minimac3/2.0.1''| |
 |[[minimac4-software|minimac4]]|1.0.3|''module load minimac4/1.0.3''| | |[[minimac4-software|minimac4]]|1.0.3|''module load minimac4/1.0.3''| |
-|[[minimap2-software|minimap2]]|2.22|''module load minimap2/2.22''| |+|[[minimap2-software|minimap2]]|2.24|''module load minimap2/2.24''| |
 |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| | |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| |
 |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| | |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| |
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 |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  | |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  |
 |[[mummer-software|mummer]]|4.0.0rc1|''module load mummer/4.0.0rc1''| | |[[mummer-software|mummer]]|4.0.0rc1|''module load mummer/4.0.0rc1''| |
-|[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| |+|[[nanopolish-software|nanopolish]]|0.14.0|''module load nanopolish/0.14.0''| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| | |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
 |[[nextalign-software|nextalign]]|1.11.0|''module load nextalign/1.11.0''| | |[[nextalign-software|nextalign]]|1.11.0|''module load nextalign/1.11.0''| |
-|[[nextclade-software|nextclade]]|1.11.0|''module load nextclade/1.11.0''| |+|[[nextclade-software|nextclade]]|2.11.0|''module load nextclade/2.11.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|21.10 (21.10.6)|''module load nextflow/21.10''| |+|[[nextflow-software|nextflow]]|22.10 (22.10.8)|''module load nextflow/22.10''| |
 |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| | |[[ngs-tools-software|ngs-tools]]|3.0.0|''module load ngs-tools/3.0.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
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 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| | |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
 |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| | |[[poplddecay-software|poplddecay]]|3.41|''module load poplddecay/3.41''| |
-|[[porechop-software|porechop]]|0.2.4|''module load porechop/0.2.4''| |+|[[porechop-software|porechop]]|0.3.2pre|''module load porechop/0.3.2pre''| |
 |[[pplacer-software|pplacer]]|1.1.alpha19|''module load pplacer/1.1.alpha19''| | |[[pplacer-software|pplacer]]|1.1.alpha19|''module load pplacer/1.1.alpha19''| |
 |[[prank-software|prank]]|170427|''module load prank/170427''| | |[[prank-software|prank]]|170427|''module load prank/170427''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth