list-of-software
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list-of-software [2023/01/24 17:57] – aorth | list-of-software [2023/05/16 18:32] – aorth | ||
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|[[angsd-software|angsd]]|0.910|'' | |[[angsd-software|angsd]]|0.910|'' | ||
|[[annovar-software|annovar]]|2016-02-01|'' | |[[annovar-software|annovar]]|2016-02-01|'' | ||
+ | |[[antismash-software|antismash]]|7.0.0|'' | ||
|[[any2fasta-software|any2fasta]]|0.4.2|'' | |[[any2fasta-software|any2fasta]]|0.4.2|'' | ||
|apt|1.14.3|'' | |apt|1.14.3|'' | ||
|[[arb-software|arb]]|6.0.3|'' | |[[arb-software|arb]]|6.0.3|'' | ||
|[[artemis-software|artemis]]|16.0.0|'' | |[[artemis-software|artemis]]|16.0.0|'' | ||
+ | |[[artic-software|artic]]|1.2.3|'' | ||
+ | |[[artic-tools-software|artic-tools]]|0.3.1|'' | ||
|[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
|[[awscli-software|awscli]]|2.4.0|'' | |[[awscli-software|awscli]]|2.4.0|'' | ||
Line 30: | Line 33: | ||
|bayescan|2.1|'' | |bayescan|2.1|'' | ||
|[[bbmap-software|bbmap]]|38.95|'' | |[[bbmap-software|bbmap]]|38.95|'' | ||
- | |[[bcftools-software|bcftools]]|1.13|'' | + | |[[bcftools-software|bcftools]]|1.15.1|'' |
|bcl2fastq|2.20.0.422|'' | |bcl2fastq|2.20.0.422|'' | ||
|[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
Line 109: | Line 112: | ||
|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
|[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
- | |[[funannotate-software|funannotate]]|1.8.11|See software page| | | + | |[[funannotate-software|funannotate]]|1.8.15|See software page| | |
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
- | |[[gatk-software|gatk]]|4.3.0.0|'' | + | |[[gatk-software|gatk]]|4.4.0.0|'' |
|[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
|[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
Line 145: | Line 148: | ||
|[[htslib-software|htslib]]|1.15.1|'' | |[[htslib-software|htslib]]|1.15.1|'' | ||
|[[hypo-software|hypo]]|1.0.3|'' | |[[hypo-software|hypo]]|1.0.3|'' | ||
+ | |[[hyphy-software|hyphy]]|2.5.48|'' | ||
|[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
|[[igblast-software|igblast]]|1.10.0|'' | |[[igblast-software|igblast]]|1.10.0|'' | ||
Line 165: | Line 169: | ||
|[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
|[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
- | |[[kma-software|kma]]|1.4.0|'' | + | |[[kma-software|kma]]|1.4.11|'' |
|[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
|[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
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|[[libsvm-software|libsvm]]|3.20|'' | |[[libsvm-software|libsvm]]|3.20|'' | ||
|[[lighter-software|lighter]]|1.1.2|'' | |[[lighter-software|lighter]]|1.1.2|'' | ||
+ | |[[longshot-software|longshot]]|0.4.5|'' | ||
|[[lordec-software|lordec]]|0.9|'' | |[[lordec-software|lordec]]|0.9|'' | ||
|[[ltr_retriever-software|ltr_retriever]]|2.9.0|'' | |[[ltr_retriever-software|ltr_retriever]]|2.9.0|'' | ||
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|[[minimac3-software|minimac3]]|2.0.1|'' | |[[minimac3-software|minimac3]]|2.0.1|'' | ||
|[[minimac4-software|minimac4]]|1.0.3|'' | |[[minimac4-software|minimac4]]|1.0.3|'' | ||
- | |[[minimap2-software|minimap2]]|2.22|'' | + | |[[minimap2-software|minimap2]]|2.24|'' |
|[[minpath-software|MinPath]]|1.0.2|'' | |[[minpath-software|MinPath]]|1.0.2|'' | ||
|[[mira-software# | |[[mira-software# | ||
Line 221: | Line 226: | ||
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
|[[mummer-software|mummer]]|4.0.0rc1|'' | |[[mummer-software|mummer]]|4.0.0rc1|'' | ||
- | |[[nanopolish-software|nanopolish]]|0.10.2|'' | + | |[[nanopolish-software|nanopolish]]|0.14.0|'' |
|[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
|[[nextalign-software|nextalign]]|1.11.0|'' | |[[nextalign-software|nextalign]]|1.11.0|'' | ||
- | |[[nextclade-software|nextclade]]|1.11.0|'' | + | |[[nextclade-software|nextclade]]|2.11.0|'' |
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' | + | |[[nextflow-software|nextflow]]|22.10 (22.10.8)|'' |
|[[ngs-tools-software|ngs-tools]]|3.0.0|'' | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
Line 236: | Line 241: | ||
|[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
|[[ocaml-software# | |[[ocaml-software# | ||
+ | |[[oligoarrayaux-software|oligoarrayaux]]|3.8.1|'' | ||
|[[opam-software# | |[[opam-software# | ||
|orthomcl|2.0.3|'' | |orthomcl|2.0.3|'' | ||
Line 262: | Line 268: | ||
|[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
|[[poplddecay-software|poplddecay]]|3.41|'' | |[[poplddecay-software|poplddecay]]|3.41|'' | ||
- | |[[porechop-software|porechop]]|0.2.4|'' | + | |[[porechop-software|porechop]]|0.3.2pre|'' |
|[[pplacer-software|pplacer]]|1.1.alpha19|'' | |[[pplacer-software|pplacer]]|1.1.alpha19|'' | ||
|[[prank-software|prank]]|170427|'' | |[[prank-software|prank]]|170427|'' | ||
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|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
- | |[[r-software|R]]|4.2.0|'' | + | |[[r-software|R]]|4.3.0|'' |
|[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
- | |[[rcorrector-software|rcorrector]]|1.0.5|'' | ||
- | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
|[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
|[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
|[[raxml-software|RAxML]]|8.2.12|'' | |[[raxml-software|RAxML]]|8.2.12|'' | ||
|[[ray-software|ray]]|2.3.1|'' | |[[ray-software|ray]]|2.3.1|'' | ||
+ | |[[rcorrector-software|rcorrector]]|1.0.5|'' | ||
|[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
|[[recon-software|recon]]|1.08|'' | |[[recon-software|recon]]|1.08|'' | ||
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|[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
|[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
+ | |[[rgi-software|rgi]]|6.0.2|'' | ||
+ | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
|[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
|[[rrnaselector-software|rRNASelector]]|1.1|'' | |[[rrnaselector-software|rRNASelector]]|1.1|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth