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list-of-software [2022/11/21 07:56] – aorthlist-of-software [2023/02/20 08:03] – aorth
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 |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| | |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| |
 |[[artemis-software|artemis]]|16.0.0|''module load act/16.0.0''| | |[[artemis-software|artemis]]|16.0.0|''module load act/16.0.0''| |
 +|[[artic-tools-software|artic-tools]]|0.3.1|''module load artic-tools/0.3.1''| |
 |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| | |[[augustus-software|augustus]]|3.3|''module load augustus/3.3''| |
 |[[awscli-software|awscli]]|2.4.0|''module load awscli/2''| | |[[awscli-software|awscli]]|2.4.0|''module load awscli/2''| |
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 |[[blast-software|blast]]|2.12.0+|''module load blast/2.12.0+''| | |[[blast-software|blast]]|2.12.0+|''module load blast/2.12.0+''| |
 |[[blobtools-software|blobtools]]|0.9.19.3|''module load blobtools/0.9.19.3''| | |[[blobtools-software|blobtools]]|0.9.19.3|''module load blobtools/0.9.19.3''| |
-|blat|06-Aug-2013|''module load blat/06-Aug-2013''| |+|[[blat-software|blat]]|37x1|''module load blat/37x1''| |
 |[[bmtagger-software|bmtagger]]|0.3.102.4|''module load bmtagger/0.3.102.4''| | |[[bmtagger-software|bmtagger]]|0.3.102.4|''module load bmtagger/0.3.102.4''| |
-|[[bowtie-software|bowtie1 ]]|1.2.3|''module load bowtie/1.2.3''| | +|[[bowtie-software|bowtie1]]|1.2.3|''module load bowtie/1.2.3''| | 
-|[[bowtie2-software|bowtie2 ]]|2.3.4.1|''module load bowtie2/2.3.4.1''| |+|[[bowtie2-software|bowtie2]]|2.5.0|''module load bowtie2/2.5.0''| |
 |[[brig-software|brig]]|0.95|''module load brig/0.95''| | |[[brig-software|brig]]|0.95|''module load brig/0.95''| |
 |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| | |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| |
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 |[[karect-software|karect]]|1.0|''module load karect/1.0''| | |[[karect-software|karect]]|1.0|''module load karect/1.0''| |
 |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| | |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| |
-|[[kma-software|kma]]|1.4.0|''module load kma/1.4.0''| |+|[[kma-software|kma]]|1.4.11|''module load kma/1.4.11''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| | |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
 |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| | |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| |
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 |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| | |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| |
 |[[ocaml-software#v4.02.1|ocaml]]|4.02.1|''module load ocaml/4.02.1''| | |[[ocaml-software#v4.02.1|ocaml]]|4.02.1|''module load ocaml/4.02.1''| |
 +|[[oligoarrayaux-software|oligoarrayaux]]|3.8.1|''module load oligoarrayaux/3.8.1''| |
 |[[opam-software#v1.2.0|opam]]|1.2.0|''module load opam/1.2.0''| | |[[opam-software#v1.2.0|opam]]|1.2.0|''module load opam/1.2.0''| |
 |orthomcl|2.0.3|''module load orthomcl/2.0.3''| | |orthomcl|2.0.3|''module load orthomcl/2.0.3''| |
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 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| | |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| | |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.26.1|''module load picard/2.26.1''| |+|[[picard-software|picard]]|2.27.5|''module load picard/2.27.5''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| | |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| | |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
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 |[[r-software|R]]|4.2.0|''module load R/4.2''| | |[[r-software|R]]|4.2.0|''module load R/4.2''| |
 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| | |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
-|[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| | 
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| | |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| | |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
 |[[ray-software|ray]]|2.3.1|''module load ray/2.3.1''| | |[[ray-software|ray]]|2.3.1|''module load ray/2.3.1''| |
 +|[[rcorrector-software|rcorrector]]|1.0.5|''module load rcorrector/1.0.5''| |
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| | |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| |
 |[[recon-software|recon]]|1.08|''module load recon/1.08''| | |[[recon-software|recon]]|1.08|''module load recon/1.08''| |
Line 292: Line 294:
 |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| | |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
 +|[[rgi-software|rgi]]|6.0.2|''module load rgi/6.0.2''| |
 +|[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
 |[[root-software|root]]|6.08.06|''module load root/6.08.06''| | |[[root-software|root]]|6.08.06|''module load root/6.08.06''| |
 |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| | |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| |
Line 312: Line 316:
 |[[seqwish-software|seqwish]]|0.6|''module load seqwish/0.6''| | |[[seqwish-software|seqwish]]|0.6|''module load seqwish/0.6''| |
 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| | |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
 +|[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| |
 |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| | |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
 |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| | |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| |
Line 341: Line 346:
 |[[sspace-software|sspace]]|3.0|''module load sspace/3.0''| | |[[sspace-software|sspace]]|3.0|''module load sspace/3.0''| |
 |[[sspace-longread-software|sspace-longread]]|1.1|''module load sspace-longread/1.1''| | |[[sspace-longread-software|sspace-longread]]|1.1|''module load sspace-longread/1.1''| |
-|[[stacks-software|stacks]]|1.24|''module load stacks/1.24''| |+|[[stacks-software|stacks]]|2.62|''module load stacks/2.62''| |
 |staden|2.0.0b8|''module load staden/2.0.0b8''| | |staden|2.0.0b8|''module load staden/2.0.0b8''| |
 |[[star-software|star]]|2.7.10a|''module load star/2.7.10a''| | |[[star-software|star]]|2.7.10a|''module load star/2.7.10a''| |
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 |[[tophat-software|tophat]]|2.1.0|''module load tophat2/2.1.0''| | |[[tophat-software|tophat]]|2.1.0|''module load tophat2/2.1.0''| |
 |[[tracer-software|tracer]]|1.6|''module load tracer/1.6''| | |[[tracer-software|tracer]]|1.6|''module load tracer/1.6''| |
 +|[[transabyss-software|transabyss]]|2.0.1|''module load transabyss/2.0.1''|  |
 |[[transdecoder-software|TransDecoder]]|2.0.1|''module load TransDecoder/2.0.1''|  | |[[transdecoder-software|TransDecoder]]|2.0.1|''module load TransDecoder/2.0.1''|  |
 |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  | |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth