Differences

This shows you the differences between two versions of the page.

--- list-of-software [2022/09/20 07:39] – aorth
+++ list-of-software [2023/01/24 14:13] – aorth
@@ Line 43: / Line 43: @@
 |[[blast-software|blast]]|2.12.0+|''module load blast/2.12.0+''| |
 |[[blobtools-software|blobtools]]|0.9.19.3|''module load blobtools/0.9.19.3''| |
-|blat|06-Aug-2013|''module load blat/06-Aug-2013''| |
+|[[blat-software|blat]]|37x1|''module load blat/37x1''| |
 |[[bmtagger-software|bmtagger]]|0.3.102.4|''module load bmtagger/0.3.102.4''| |
-|[[bowtie-software|bowtie1 ]]|1.2.3|''module load bowtie/1.2.3''| |
+|[[bowtie-software|bowtie1]]|1.2.3|''module load bowtie/1.2.3''| |
-|[[bowtie2-software|bowtie2 ]]|2.3.4.1|''module load bowtie2/2.3.4.1''| |
+|[[bowtie2-software|bowtie2]]|2.5.0|''module load bowtie2/2.5.0''| |
 |[[brig-software|brig]]|0.95|''module load brig/0.95''| |
 |[[busco-software|BUSCO ]]|5.2.2|''module load BUSCO/5.2.2''| |
@@ Line 82: / Line 82: @@
 |[[eagle-software|eagle]]|2.4.1|''module load eagle/2.4.1''| |
 |[[edirect-software|edirect]]| 7.80 | ''module load edirect/7.80'' | |
+|[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | ''module load eggnog-mapper/2.1.9'' | |
 |eigenstrat|3.0|''module load eigenstrat/3.0''| |
 |[[emblmygff3-software|emblmygff3]]|2.1|''module load emblmygff3/2.1''| |
@@ Line 110: / Line 111: @@
 |[[funannotate-software|funannotate]]|1.8.11|See software page| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
-|[[gatk-software|gatk]]|4.2.2.0|''module load gatk/4.2.2.0''| |
+|[[gatk-software|gatk]]|4.3.0.0|''module load gatk/4.3.0.0''| |
 |[[gapfiller-software|gapfiller]]|1.10|''module load gapfiller/1.10''| |
 |[[geneid-software|geneid]]|1.4.4|''module load geneid/1.4.4''| |
@@ Line 253: / Line 254: @@
 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.26.1|''module load picard/2.26.1''| |
+|[[picard-software|picard]]|2.27.5|''module load picard/2.27.5''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
@@ Line 281: / Line 282: @@
 |[[r-software|R]]|4.2.0|''module load R/4.2''| |
 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
+|[[rcorrector-software|R]]|1.0.5|''module load rcorrector/1.0.5''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
@@ Line 311: / Line 313: @@
 |[[seqwish-software|seqwish]]|0.6|''module load seqwish/0.6''| |
 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
+|[[shannon_cpp-software|shannon_cpp]]|0.5.0|''module load shannon_cpp/0.5.0''| |
 |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
 |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| |
@@ Line 340: / Line 343: @@
 |[[sspace-software|sspace]]|3.0|''module load sspace/3.0''| |
 |[[sspace-longread-software|sspace-longread]]|1.1|''module load sspace-longread/1.1''| |
-|[[stacks-software|stacks]]|1.24|''module load stacks/1.24''| |
+|[[stacks-software|stacks]]|2.62|''module load stacks/2.62''| |
 |staden|2.0.0b8|''module load staden/2.0.0b8''| |
 |[[star-software|star]]|2.7.10a|''module load star/2.7.10a''| |
@@ Line 354: / Line 357: @@
 |[[tophat-software|tophat]]|2.1.0|''module load tophat2/2.1.0''| |
 |[[tracer-software|tracer]]|1.6|''module load tracer/1.6''| |
+|[[transabyss-software|transabyss]]|2.0.1|''module load transabyss/2.0.1''|  |
 |[[transdecoder-software|TransDecoder]]|2.0.1|''module load TransDecoder/2.0.1''|  |
 |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  |