list-of-software
Differences
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| list-of-software [2022/07/25 15:54] – aorth | list-of-software [2023/01/24 08:33] – aorth | ||
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| |[[blast-software|blast]]|2.12.0+|'' | |[[blast-software|blast]]|2.12.0+|'' | ||
| |[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
| - | |blat|06-Aug-2013|'' | + | |[[blat-software|blat]]|37x1|'' |
| |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | ||
| - | |[[bowtie-software|bowtie1 ]]|1.2.3|'' | + | |[[bowtie-software|bowtie1]]|1.2.3|'' |
| - | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | + | |[[bowtie2-software|bowtie2]]|2.5.0|'' |
| |[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
| |[[busco-software|BUSCO ]]|5.2.2|'' | |[[busco-software|BUSCO ]]|5.2.2|'' | ||
| Line 82: | Line 82: | ||
| |[[eagle-software|eagle]]|2.4.1|'' | |[[eagle-software|eagle]]|2.4.1|'' | ||
| |[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
| + | |[[eggnog-mapper-software|eggnog-mapper]]| 2.1.9 | '' | ||
| |eigenstrat|3.0|'' | |eigenstrat|3.0|'' | ||
| |[[emblmygff3-software|emblmygff3]]|2.1|'' | |[[emblmygff3-software|emblmygff3]]|2.1|'' | ||
| Line 110: | Line 111: | ||
| |[[funannotate-software|funannotate]]|1.8.11|See software page| | | |[[funannotate-software|funannotate]]|1.8.11|See software page| | | ||
| |[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
| - | |[[gatk-software|gatk]]|4.2.2.0|'' | + | |[[gatk-software|gatk]]|4.3.0.0|'' |
| |[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
| |[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
| Line 253: | Line 254: | ||
| |[[phylip-software|phylip]]|3.696|'' | |[[phylip-software|phylip]]|3.696|'' | ||
| |[[phyml-software|phyml]]|3.3.20180621|'' | |[[phyml-software|phyml]]|3.3.20180621|'' | ||
| - | |[[picard-software|picard]]|2.26.1|'' | + | |[[picard-software|picard]]|2.27.5|'' |
| |[[picrust-software# | |[[picrust-software# | ||
| |[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
| Line 272: | Line 273: | ||
| |[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
| |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | ||
| - | |[[python-software|python]]|3.8.11|'' | + | |[[python-software|python]]|3.9.14|'' |
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| |[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
| Line 329: | Line 330: | ||
| |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | ||
| |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | ||
| - | |[[spades-software|spades]]|3.15 (3.15.4)|'' | + | |[[spades-software|spades]]|3.15 (3.15.5)|'' |
| |[[sourmash-software|sourmash]]|1.0|'' | |[[sourmash-software|sourmash]]|1.0|'' | ||
| |[[speedseq-software|speedseq]]|0.1.2|'' | |[[speedseq-software|speedseq]]|0.1.2|'' | ||
| Line 340: | Line 341: | ||
| |[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
| |[[sspace-longread-software|sspace-longread]]|1.1|'' | |[[sspace-longread-software|sspace-longread]]|1.1|'' | ||
| - | |[[stacks-software|stacks]]|1.24|'' | + | |[[stacks-software|stacks]]|2.62|'' |
| |staden|2.0.0b8|'' | |staden|2.0.0b8|'' | ||
| |[[star-software|star]]|2.7.10a|'' | |[[star-software|star]]|2.7.10a|'' | ||
| Line 354: | Line 355: | ||
| |[[tophat-software|tophat]]|2.1.0|'' | |[[tophat-software|tophat]]|2.1.0|'' | ||
| |[[tracer-software|tracer]]|1.6|'' | |[[tracer-software|tracer]]|1.6|'' | ||
| + | |[[transabyss-software|transabyss]]|2.0.1|'' | ||
| |[[transdecoder-software|TransDecoder]]|2.0.1|'' | |[[transdecoder-software|TransDecoder]]|2.0.1|'' | ||
| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth