list-of-software
Differences
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| list-of-software [2022/06/17 07:17] – aorth | list-of-software [2022/07/25 15:54] – aorth | ||
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| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| |[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
| - | |[[funannotate-software|funannotate]]|1.8.9|'' | + | |[[funannotate-software|funannotate]]|1.8.11|See software page| | |
| |[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
| |[[gatk-software|gatk]]|4.2.2.0|'' | |[[gatk-software|gatk]]|4.2.2.0|'' | ||
| Line 128: | Line 128: | ||
| |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
| |[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
| - | |[[guppy-software|guppy]]|6.0.1|'' | + | |[[guppy-software|guppy]]|6.2.1|'' |
| |[[halcyon-software|halcyon]]|0.1.1|'' | |[[halcyon-software|halcyon]]|0.1.1|'' | ||
| |[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
| Line 142: | Line 142: | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| - | |[[htslib-software|htslib]]|1.13|'' | + | |[[htslib-software|htslib]]|1.15.1|'' |
| |[[hypo-software|hypo]]|1.0.3|'' | |[[hypo-software|hypo]]|1.0.3|'' | ||
| |[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
| Line 168: | Line 168: | ||
| |[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
| |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
| - | |[[kraken-software|kraken]]|2.0.8-beta|'' | + | |[[kraken-software|kraken]]|2.1.2|'' |
| |[[krona-software|krona]]|2.8.1|'' | |[[krona-software|krona]]|2.8.1|'' | ||
| |lamp|2.5|'' | |lamp|2.5|'' | ||
| Line 202: | Line 202: | ||
| |[[migmap-software|migmap]]|1.0.2|'' | |[[migmap-software|migmap]]|1.0.2|'' | ||
| |[[miniasm-software|miniasm]]|0.3|'' | |[[miniasm-software|miniasm]]|0.3|'' | ||
| + | |[[minimac3-software|minimac3]]|2.0.1|'' | ||
| |[[minimac4-software|minimac4]]|1.0.3|'' | |[[minimac4-software|minimac4]]|1.0.3|'' | ||
| |[[minimap2-software|minimap2]]|2.22|'' | |[[minimap2-software|minimap2]]|2.22|'' | ||
| Line 230: | Line 231: | ||
| |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
| |[[nQuire-software|nQuire]]|git-a990a88e|'' | |[[nQuire-software|nQuire]]|git-a990a88e|'' | ||
| - | |[[nvtop-software|nvtop]]|1.2.2|'' | + | |[[nvtop-software|nvtop]]|2.0.2|'' |
| |novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
| |[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
| Line 295: | Line 296: | ||
| |[[rseqc-software|rseqc]]|2.6.4|'' | |[[rseqc-software|rseqc]]|2.6.4|'' | ||
| |[[ruby-software|ruby]]|2.2.3|'' | |[[ruby-software|ruby]]|2.2.3|'' | ||
| - | |[[samtools-software|samtools]]|1.13|'' | + | |[[samtools-software|samtools]]|1.15.1|'' |
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| |[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth