list-of-software
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list-of-software [2022/04/25 15:14] – aorth | list-of-software [2022/06/23 09:30] – aorth | ||
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|[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
|[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
+ | |[[eagle-software|eagle]]|2.4.1|'' | ||
|[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
|eigenstrat|3.0|'' | |eigenstrat|3.0|'' | ||
+ | |[[emblmygff3-software|emblmygff3]]|2.1|'' | ||
|[[emboss-software|emboss]]|6.6.0|'' | |[[emboss-software|emboss]]|6.6.0|'' | ||
|[[easer-software|easer]]|1.7.0|'' | |[[easer-software|easer]]|1.7.0|'' | ||
Line 126: | Line 128: | ||
|[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
|[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
- | |[[guppy-software|guppy]]|5.0.11|'' | + | |[[guppy-software|guppy]]|6.0.1|'' |
|[[halcyon-software|halcyon]]|0.1.1|'' | |[[halcyon-software|halcyon]]|0.1.1|'' | ||
|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
Line 137: | Line 139: | ||
|[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
|[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
+ | |[[hifiasm-software|hifiasm]]|0.16.1|'' | ||
|[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
|[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
- | |[[htslib-software|htslib]]|1.13|'' | + | |[[htslib-software|htslib]]|1.15.1|'' |
|[[hypo-software|hypo]]|1.0.3|'' | |[[hypo-software|hypo]]|1.0.3|'' | ||
|[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
Line 146: | Line 149: | ||
|[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
|[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
- | |[[iqtree-software|iqtree]]|1.6.12|'' | + | |[[iqtree-software|iqtree]]|2.2.0|'' |
|[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
|[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
Line 199: | Line 202: | ||
|[[migmap-software|migmap]]|1.0.2|'' | |[[migmap-software|migmap]]|1.0.2|'' | ||
|[[miniasm-software|miniasm]]|0.3|'' | |[[miniasm-software|miniasm]]|0.3|'' | ||
+ | |[[minimac4-software|minimac4]]|1.0.3|'' | ||
|[[minimap2-software|minimap2]]|2.22|'' | |[[minimap2-software|minimap2]]|2.22|'' | ||
|[[minpath-software|MinPath]]|1.0.2|'' | |[[minpath-software|MinPath]]|1.0.2|'' | ||
Line 260: | Line 264: | ||
|[[prank-software|prank]]|170427|'' | |[[prank-software|prank]]|170427|'' | ||
|[[presto-software|presto]]|0.5.13|'' | |[[presto-software|presto]]|0.5.13|'' | ||
+ | |[[primalscheme-software|primalscheme]]|1.3.2|'' | ||
|primer3|2.3.6|'' | |primer3|2.3.6|'' | ||
|[[prinseq-software|prinseq]]|0.20.4|'' | |[[prinseq-software|prinseq]]|0.20.4|'' | ||
Line 273: | Line 278: | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
- | |[[r-software|R]]|4.0.5|'' | + | |[[r-software|R]]|4.2.0|'' |
|[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
|[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
Line 336: | Line 341: | ||
|[[stacks-software|stacks]]|1.24|'' | |[[stacks-software|stacks]]|1.24|'' | ||
|staden|2.0.0b8|'' | |staden|2.0.0b8|'' | ||
- | |[[star-software|star]]|2.7.1a|'' | + | |[[star-software|star]]|2.7.10a|'' |
|[[structure-software|structure]]|2.3.4|'' | |[[structure-software|structure]]|2.3.4|'' | ||
|[[stringtie-software|stringtie]]|1.3.4d|'' | |[[stringtie-software|stringtie]]|1.3.4d|'' | ||
+ | |[[stringtie2-software|stringtie2]]|2.0.1|'' | ||
|[[subread-software|subread]]|1.6.2|'' | |[[subread-software|subread]]|1.6.2|'' | ||
|svmlight|V6.02|'' | |svmlight|V6.02|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth