list-of-software
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| list-of-software [2022/04/01 08:00] – aorth | list-of-software [2022/05/18 07:43] – aorth | ||
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| |censor|4.2.28|'' | |censor|4.2.28|'' | ||
| |[[centrifuge-software|centrifuge]]|1.0.4|'' | |[[centrifuge-software|centrifuge]]|1.0.4|'' | ||
| - | |[[changeo-software|changeo]]|1.0.0|'' | + | |[[changeo-software|changeo]]|1.2.0|'' |
| |[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
| |[[circos-software|circos]]|0.69-9|'' | |[[circos-software|circos]]|0.69-9|'' | ||
| Line 82: | Line 82: | ||
| |[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
| |eigenstrat|3.0|'' | |eigenstrat|3.0|'' | ||
| + | |[[emblmygff3-software|emblmygff3]]|2.1|'' | ||
| |[[emboss-software|emboss]]|6.6.0|'' | |[[emboss-software|emboss]]|6.6.0|'' | ||
| |[[easer-software|easer]]|1.7.0|'' | |[[easer-software|easer]]|1.7.0|'' | ||
| Line 87: | Line 88: | ||
| |[[exabayes-software|exabayes]]|1.4.1|'' | |[[exabayes-software|exabayes]]|1.4.1|'' | ||
| |[[express-software|express]]|1.5.1|'' | |[[express-software|express]]|1.5.1|'' | ||
| + | |[[falco-software|falco]]|0.3.0|'' | ||
| |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
| |[[fastANI-software|fastANI]]|1.3|'' | |[[fastANI-software|fastANI]]|1.3|'' | ||
| Line 136: | Line 138: | ||
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
| + | |[[hifiasm-software|hifiasm]]|0.16.1|'' | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| Line 145: | Line 148: | ||
| |[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
| |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
| - | |[[iqtree-software|iqtree]]|1.6.12|'' | + | |[[iqtree-software|iqtree]]|2.2.0|'' |
| |[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
| |[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
| Line 216: | Line 219: | ||
| |[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| - | |[[nextalign-software|nextalign]]|1.3.0|'' | + | |[[nextalign-software|nextalign]]|1.11.0|'' |
| |[[nextclade-software|nextclade]]|1.11.0|'' | |[[nextclade-software|nextclade]]|1.11.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| Line 338: | Line 341: | ||
| |[[structure-software|structure]]|2.3.4|'' | |[[structure-software|structure]]|2.3.4|'' | ||
| |[[stringtie-software|stringtie]]|1.3.4d|'' | |[[stringtie-software|stringtie]]|1.3.4d|'' | ||
| + | |[[stringtie2-software|stringtie2]]|2.0.1|'' | ||
| |[[subread-software|subread]]|1.6.2|'' | |[[subread-software|subread]]|1.6.2|'' | ||
| |svmlight|V6.02|'' | |svmlight|V6.02|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth