list-of-software
Differences
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list-of-software [2022/03/14 14:35] – aorth | list-of-software [2022/05/24 12:00] – aorth | ||
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|[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
|blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
+ | |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | ||
|[[bowtie-software|bowtie1 ]]|1.2.3|'' | |[[bowtie-software|bowtie1 ]]|1.2.3|'' | ||
|[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
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|censor|4.2.28|'' | |censor|4.2.28|'' | ||
|[[centrifuge-software|centrifuge]]|1.0.4|'' | |[[centrifuge-software|centrifuge]]|1.0.4|'' | ||
- | |[[changeo-software|changeo]]|1.0.0|'' | + | |[[changeo-software|changeo]]|1.2.0|'' |
|[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
|[[circos-software|circos]]|0.69-9|'' | |[[circos-software|circos]]|0.69-9|'' | ||
Line 76: | Line 77: | ||
|[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
|dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
- | |[[diamond-software|diamond]]|0.9.9|'' | + | |[[diamond-software|diamond]]|2.0.14|'' |
|[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
|[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
|[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
|eigenstrat|3.0|'' | |eigenstrat|3.0|'' | ||
+ | |[[emblmygff3-software|emblmygff3]]|2.1|'' | ||
|[[emboss-software|emboss]]|6.6.0|'' | |[[emboss-software|emboss]]|6.6.0|'' | ||
|[[easer-software|easer]]|1.7.0|'' | |[[easer-software|easer]]|1.7.0|'' | ||
Line 86: | Line 88: | ||
|[[exabayes-software|exabayes]]|1.4.1|'' | |[[exabayes-software|exabayes]]|1.4.1|'' | ||
|[[express-software|express]]|1.5.1|'' | |[[express-software|express]]|1.5.1|'' | ||
+ | |[[falco-software|falco]]|0.3.0|'' | ||
|[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
|[[fastANI-software|fastANI]]|1.3|'' | |[[fastANI-software|fastANI]]|1.3|'' | ||
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|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
|[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
- | |[[funannotate-software|funannotate]]|1.8.7|'' | + | |[[funannotate-software|funannotate]]|1.8.9|'' |
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
|[[gatk-software|gatk]]|4.2.2.0|'' | |[[gatk-software|gatk]]|4.2.2.0|'' | ||
Line 124: | Line 127: | ||
|[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
|[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
- | |[[guppy-software|guppy]]|5.0.11|'' | + | |[[guppy-software|guppy]]|6.0.1|'' |
|[[halcyon-software|halcyon]]|0.1.1|'' | |[[halcyon-software|halcyon]]|0.1.1|'' | ||
|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
Line 135: | Line 138: | ||
|[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
|[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
+ | |[[hifiasm-software|hifiasm]]|0.16.1|'' | ||
|[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
|[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
Line 144: | Line 148: | ||
|[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
|[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
- | |[[iqtree-software|iqtree]]|1.6.12|'' | + | |[[iqtree-software|iqtree]]|2.2.0|'' |
|[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
|[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
Line 210: | Line 214: | ||
|mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
|mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
- | |[[multiqc-software|multiqc]]|1.6|'' | + | |[[multiqc-software|multiqc]]|1.12|'' |
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
|[[mummer-software|mummer]]|4.0.0rc1|'' | |[[mummer-software|mummer]]|4.0.0rc1|'' | ||
|[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
|[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
- | |[[nextalign-software|nextalign]]|1.3.0|'' | + | |[[nextalign-software|nextalign]]|1.11.0|'' |
- | |[[nextclade-software|nextclade]]|1.3.0|'' | + | |[[nextclade-software|nextclade]]|1.11.0|'' |
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
|[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' | ||
+ | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
|[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
Line 257: | Line 262: | ||
|[[prank-software|prank]]|170427|'' | |[[prank-software|prank]]|170427|'' | ||
|[[presto-software|presto]]|0.5.13|'' | |[[presto-software|presto]]|0.5.13|'' | ||
+ | |[[primalscheme-software|primalscheme]]|1.3.2|'' | ||
|primer3|2.3.6|'' | |primer3|2.3.6|'' | ||
|[[prinseq-software|prinseq]]|0.20.4|'' | |[[prinseq-software|prinseq]]|0.20.4|'' | ||
Line 270: | Line 276: | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
- | |[[r-software|R]]|4.0.5|'' | + | |[[r-software|R]]|4.2.0|'' |
|[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
|[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
Line 327: | Line 333: | ||
|[[squid-software|squid]]|1.9g|'' | |[[squid-software|squid]]|1.9g|'' | ||
|[[sratoolkit-software|sratoolkit]]|2.10.0|'' | |[[sratoolkit-software|sratoolkit]]|2.10.0|'' | ||
+ | |[[sra-tools-software|sra-tools]]|3.0.0|'' | ||
+ | |[[srprism-software|srprism]]|3.1.2|'' | ||
|[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
|[[sspace-longread-software|sspace-longread]]|1.1|'' | |[[sspace-longread-software|sspace-longread]]|1.1|'' | ||
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|[[structure-software|structure]]|2.3.4|'' | |[[structure-software|structure]]|2.3.4|'' | ||
|[[stringtie-software|stringtie]]|1.3.4d|'' | |[[stringtie-software|stringtie]]|1.3.4d|'' | ||
+ | |[[stringtie2-software|stringtie2]]|2.0.1|'' | ||
|[[subread-software|subread]]|1.6.2|'' | |[[subread-software|subread]]|1.6.2|'' | ||
|svmlight|V6.02|'' | |svmlight|V6.02|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth