list-of-software
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list-of-software [2022/02/24 06:52] – aorth | list-of-software [2022/03/28 06:09] – aorth | ||
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|[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
|blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
+ | |[[bmtagger-software|bmtagger]]|0.3.102.4|'' | ||
|[[bowtie-software|bowtie1 ]]|1.2.3|'' | |[[bowtie-software|bowtie1 ]]|1.2.3|'' | ||
|[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
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|[[canu-software|canu]]|1.8|'' | |[[canu-software|canu]]|1.8|'' | ||
|cap3|latest|'' | |cap3|latest|'' | ||
+ | |[[ccmetagen-software|ccmetagen]]|1.4.0|'' | ||
|[[cd-hit-software|cd-hit]]|4.8.1|'' | |[[cd-hit-software|cd-hit]]|4.8.1|'' | ||
|[[cegma-software|cegma]]|v2.5|'' | |[[cegma-software|cegma]]|v2.5|'' | ||
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|[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
|dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
- | |[[diamond-software|diamond]]|0.9.9|'' | + | |[[diamond-software|diamond]]|2.0.14|'' |
|[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
|[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
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|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
|[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
- | |[[funannotate-software|funannotate]]|1.8.7|'' | + | |[[funannotate-software|funannotate]]|1.8.9|'' |
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
|[[gatk-software|gatk]]|4.2.2.0|'' | |[[gatk-software|gatk]]|4.2.2.0|'' | ||
Line 115: | Line 117: | ||
|glu|1.0b3-prerelease4|'' | |glu|1.0b3-prerelease4|'' | ||
|[[gmap-software|gmap]]|2015-12-31|'' | |[[gmap-software|gmap]]|2015-12-31|'' | ||
+ | |[[graphlan-software|graphlan]]|1.1.3|'' | ||
|[[graphmap-software|graphmap]]|0.5.2|'' | |[[graphmap-software|graphmap]]|0.5.2|'' | ||
|[[grom-rd-software|grom-rd]]|1.0|'' | |[[grom-rd-software|grom-rd]]|1.0|'' | ||
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|[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
|[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
+ | |[[kma-software|kma]]|1.4.0|'' | ||
|[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
|[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
|[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
|[[kraken-software|kraken]]|2.0.8-beta|'' | |[[kraken-software|kraken]]|2.0.8-beta|'' | ||
- | |krona|2.4|'' | + | |[[krona-software|krona]]|2.8.1|'' |
|lamp|2.5|'' | |lamp|2.5|'' | ||
|lava|0.1|'' | |lava|0.1|'' | ||
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|mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
|mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
- | |[[multiqc-software|multiqc]]|1.6|'' | + | |[[multiqc-software|multiqc]]|1.12|'' |
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
|[[mummer-software|mummer]]|4.0.0rc1|'' | |[[mummer-software|mummer]]|4.0.0rc1|'' | ||
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|[[nextclade-software|nextclade]]|1.3.0|'' | |[[nextclade-software|nextclade]]|1.3.0|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|21.04.3|'' | + | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' |
+ | |[[ngs-tools-software|ngs-tools]]|3.0.0|'' | ||
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
|[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
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|[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
|[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
+ | |[[pathoscope-software|pathoscope]]|2.0.7|'' | ||
|[[pear-software|pear]]|0.9.6|'' | |[[pear-software|pear]]|0.9.6|'' | ||
|[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
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|[[squid-software|squid]]|1.9g|'' | |[[squid-software|squid]]|1.9g|'' | ||
|[[sratoolkit-software|sratoolkit]]|2.10.0|'' | |[[sratoolkit-software|sratoolkit]]|2.10.0|'' | ||
+ | |[[sra-tools-software|sra-tools]]|3.0.0|'' | ||
+ | |[[srprism-software|srprism]]|3.1.2|'' | ||
|[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
|[[sspace-longread-software|sspace-longread]]|1.1|'' | |[[sspace-longread-software|sspace-longread]]|1.1|'' | ||
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|[[vcftools-software|vcftools]]|0.1.16|'' | |[[vcftools-software|vcftools]]|0.1.16|'' | ||
|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
+ | |[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | ||
|[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
|[[vg-software|vg]]|1.27.0|'' | |[[vg-software|vg]]|1.27.0|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth