list-of-software
Differences
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| list-of-software [2022/02/22 14:31] – aorth | list-of-software [2022/03/17 19:49] – aorth | ||
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| |[[canu-software|canu]]|1.8|'' | |[[canu-software|canu]]|1.8|'' | ||
| |cap3|latest|'' | |cap3|latest|'' | ||
| + | |[[ccmetagen-software|ccmetagen]]|1.4.0|'' | ||
| |[[cd-hit-software|cd-hit]]|4.8.1|'' | |[[cd-hit-software|cd-hit]]|4.8.1|'' | ||
| |[[cegma-software|cegma]]|v2.5|'' | |[[cegma-software|cegma]]|v2.5|'' | ||
| Line 72: | Line 73: | ||
| |cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
| |[[cutadapt-software|cutadapt]]|3.5|'' | |[[cutadapt-software|cutadapt]]|3.5|'' | ||
| + | |[[czid-cli-software|czid-cli]]|3.0.2|'' | ||
| |[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
| |dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
| - | |[[diamond-software|diamond]]|0.9.9|'' | + | |[[diamond-software|diamond]]|2.0.14|'' |
| |[[drep-software|drep]]|2.5.4|'' | |[[drep-software|drep]]|2.5.4|'' | ||
| |[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
| Line 102: | Line 104: | ||
| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| |[[freebayes-software|freebayes]]|1.3.4|'' | |[[freebayes-software|freebayes]]|1.3.4|'' | ||
| - | |[[funannotate-software|funannotate]]|1.8.7|'' | + | |[[funannotate-software|funannotate]]|1.8.9|'' |
| |[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
| |[[gatk-software|gatk]]|4.2.2.0|'' | |[[gatk-software|gatk]]|4.2.2.0|'' | ||
| Line 114: | Line 116: | ||
| |glu|1.0b3-prerelease4|'' | |glu|1.0b3-prerelease4|'' | ||
| |[[gmap-software|gmap]]|2015-12-31|'' | |[[gmap-software|gmap]]|2015-12-31|'' | ||
| + | |[[graphlan-software|graphlan]]|1.1.3|'' | ||
| |[[graphmap-software|graphmap]]|0.5.2|'' | |[[graphmap-software|graphmap]]|0.5.2|'' | ||
| |[[grom-rd-software|grom-rd]]|1.0|'' | |[[grom-rd-software|grom-rd]]|1.0|'' | ||
| Line 156: | Line 159: | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| |[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
| + | |[[kma-software|kma]]|1.4.0|'' | ||
| |[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
| |[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
| |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
| |[[kraken-software|kraken]]|2.0.8-beta|'' | |[[kraken-software|kraken]]|2.0.8-beta|'' | ||
| - | |krona|2.4|'' | + | |[[krona-software|krona]]|2.8.1|'' |
| |lamp|2.5|'' | |lamp|2.5|'' | ||
| |lava|0.1|'' | |lava|0.1|'' | ||
| Line 214: | Line 218: | ||
| |[[nextclade-software|nextclade]]|1.3.0|'' | |[[nextclade-software|nextclade]]|1.3.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|21.04.3|'' | + | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' |
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| |[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
| Line 231: | Line 235: | ||
| |[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
| |[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
| + | |[[pathoscope-software|pathoscope]]|2.0.7|'' | ||
| |[[pear-software|pear]]|0.9.6|'' | |[[pear-software|pear]]|0.9.6|'' | ||
| |[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
| Line 353: | Line 358: | ||
| |[[vcftools-software|vcftools]]|0.1.16|'' | |[[vcftools-software|vcftools]]|0.1.16|'' | ||
| |[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
| + | |[[velvetoptimiser-software|velvetoptimiser]]|2.2.6|'' | ||
| |[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
| |[[vg-software|vg]]|1.27.0|'' | |[[vg-software|vg]]|1.27.0|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth