Differences

This shows you the differences between two versions of the page.

--- list-of-software [2022/02/22 13:33] – aorth
+++ list-of-software [2022/03/11 12:32] – aorth
@@ Line 1: / Line 1: @@
-====== List of Software ======
+[[====== List of Software ======
 In general you can use the command ''module avail'' to show you the list of available software and their versions. Sometimes there are other software packages installed which aren't listed via the modules system; if you're curious you can look around in ///export/apps// to see if you can find what you're looking for.
@@ Line 57: / Line 57: @@
 |celera-wgs|6.1|''module load celera-wgs/6.1''| |
 |censor|4.2.28|''module load censor/4.2.28''| |
+|[[centrifuge-software|centrifuge]]|1.0.4|''module load centrifuge/1.0.4''| |
 |[[changeo-software|changeo]]|1.0.0|''module load changeo/1.0.0''| |
 |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
@@ Line 71: / Line 72: @@
 |cufflinks|2.2.1|''module load cufflinks/2.2.1''| |
 |[[cutadapt-software|cutadapt]]|3.5|''module load cutadapt/3.5''| |
+|[[czid-cli-software|czid-cli]]|3.0.2|''module load czid-cli/3.0.2''| |
 |[[dextractor-software|dextractor]]|git-a7f50c52|''module load dextractor/git-a7f50c52''| |
 |dendroscope|2.7.4|''module load dendroscope/2.7.4''| |
@@ Line 113: / Line 115: @@
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
+|[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
 |[[graphmap-software|graphmap]]|0.5.2|''module load graphmap/0.5.2''| |
 |[[grom-rd-software|grom-rd]]|1.0|''module load grom-rd/1.0''| |
@@ Line 155: / Line 158: @@
 |[[karect-software|karect]]|1.0|''module load karect/1.0''| |
 |[[kat-software|kat]]|2.3.4|''module load kat/2.3.4''| |
+|[[kma-software|kma]]|1.4.0|''module load kma/1.4.0''| |
 |[[kmc-software|kmc]]|3.1.1|''module load kmc/3.1.1''| |
 |[[kmergenie-software|kmergenie]]|1.7038|''module load kmergenie/1.7038''| |
@@ Line 213: / Line 217: @@
 |[[nextclade-software|nextclade]]|1.3.0|''module load nextclade/1.3.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| |
+|[[nextflow-software|nextflow]]|21.10 (21.10.6)|''module load nextflow/21.10''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
@@ Line 230: / Line 234: @@
 |[[pandaseq-software|pandaseq]]|2.8.1|''module load pandaseq/2.8.1''|  |
 |[[pasta-software|pasta]]|d939adb2|''module load pasta/d939adb2''|  |
+|[[pathoscope-software|pathoscope]]|2.0.7|''module load pathoscope/2.0.7''| |
 |[[pear-software|pear]]|0.9.6|''module load pear/0.9.6''| |
 |[[pblat-software|pblat]]|2.1|''module load pblat/2.1''| |