Differences

This shows you the differences between two versions of the page.

--- list-of-software [2022/02/18 08:28] – aorth
+++ list-of-software [2022/03/11 08:29] – aorth
@@ Line 29: / Line 29: @@
 |[[barrnap-software|barrnap]]|0.9|''module load barrnap/0.9''| |
 |bayescan|2.1|''module load bayescan/2.1''| |
-|[[bbmap-software|bbmap]]|38.67|''module load bbmap/38.67''| |
+|[[bbmap-software|bbmap]]|38.95|''module load bbmap/38.95''| |
 |[[bcftools-software|bcftools]]|1.13|''module load bcftools/1.13''| |
 |bcl2fastq|2.20.0.422|''bcl2fastq''| |
@@ Line 57: / Line 57: @@
 |celera-wgs|6.1|''module load celera-wgs/6.1''| |
 |censor|4.2.28|''module load censor/4.2.28''| |
+|[[centrifuge-software|centrifuge]]|1.0.4|''module load centrifuge/1.0.4''| |
 |[[changeo-software|changeo]]|1.0.0|''module load changeo/1.0.0''| |
 |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
@@ Line 71: / Line 72: @@
 |cufflinks|2.2.1|''module load cufflinks/2.2.1''| |
 |[[cutadapt-software|cutadapt]]|3.5|''module load cutadapt/3.5''| |
+|[[czid-cli-software|czid-cli]]|3.0.2|''module load czid-cli/3.0.2''| |
 |[[dextractor-software|dextractor]]|git-a7f50c52|''module load dextractor/git-a7f50c52''| |
 |dendroscope|2.7.4|''module load dendroscope/2.7.4''| |
@@ Line 113: / Line 115: @@
 |glu|1.0b3-prerelease4|''module load glu/1.0b3-prerelease4''| |
 |[[gmap-software|gmap]]|2015-12-31|''module load gmap/2015-12-31''| |
+|[[graphlan-software|graphlan]]|1.1.3|''module load graphlan/1.1.3''| |
 |[[graphmap-software|graphmap]]|0.5.2|''module load graphmap/0.5.2''| |
 |[[grom-rd-software|grom-rd]]|1.0|''module load grom-rd/1.0''| |
@@ Line 166: / Line 169: @@
 |[[lighter-software|lighter]]|1.1.2|''module load lighter/1.1.2''| |
 |[[lordec-software|lordec]]|0.9|''module load lordec/0.9''| |
+|[[ltr_retriever-software|ltr_retriever]]|2.9.0|''module load ltr_retriever/2.9.0''| |
 |lucy|1.19p|''module load lucy/1.19p''| |
 |[[mafft-software|mafft]]|7.475|''module load mafft/7.475''| |
@@ Line 181: / Line 185: @@
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
 |[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |
-|[[megahit-software|megahit]]|1.1.4|''module load megahit/1.1.4''| |
+|[[megahit-software|megahit]]|1.2.9|''module load megahit/1.2.9''| |
 |megan|4.70.4|''module load megan/4.70.4''| |
 |[[megax-software|megax]]|10.0.5|''module load megax/10.0.5''| |
@@ Line 212: / Line 216: @@
 |[[nextclade-software|nextclade]]|1.3.0|''module load nextclade/1.3.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| |
+|[[nextflow-software|nextflow]]|21.10 (21.10.6)|''module load nextflow/21.10''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
@@ Line 229: / Line 233: @@
 |[[pandaseq-software|pandaseq]]|2.8.1|''module load pandaseq/2.8.1''|  |
 |[[pasta-software|pasta]]|d939adb2|''module load pasta/d939adb2''|  |
+|[[pathoscope-software|pathoscope]]|2.0.7|''module load pathoscope/2.0.7''| |
 |[[pear-software|pear]]|0.9.6|''module load pear/0.9.6''| |
 |[[pblat-software|pblat]]|2.1|''module load pblat/2.1''| |
@@ Line 313: / Line 318: @@
 |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|''module load SOAPdenovo-Trans/1.03''| |
 |[[solexaqa-software|SolexaQA++]]|3.1.3|''module load SolexaQA++/3.1.3''| |
-|[[spades-software|spades]]|3.13.0|''module load spades/3.13.0''| |
+|[[spades-software|spades]]|3.15 (3.15.4)|''module load spades/3.15''| |
 |[[sourmash-software|sourmash]]|1.0|''module load sourmash/1.0''| |
 |[[speedseq-software|speedseq]]|0.1.2|''module load speedseq/0.1.2''| |