list-of-software
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list-of-software [2021/12/28 11:42] – aorth | list-of-software [2022/03/11 12:33] – old revision restored (2022/03/11 08:29) aorth | ||
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|[[barrnap-software|barrnap]]|0.9|'' | |[[barrnap-software|barrnap]]|0.9|'' | ||
|bayescan|2.1|'' | |bayescan|2.1|'' | ||
- | |[[bbmap-software|bbmap]]|38.67|'' | + | |[[bbmap-software|bbmap]]|38.95|'' |
|[[bcftools-software|bcftools]]|1.13|'' | |[[bcftools-software|bcftools]]|1.13|'' | ||
+ | |bcl2fastq|2.20.0.422|'' | ||
|[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
|[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
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|[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
|[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
- | |[[busco-software|BUSCO ]]|4.0.6|'' | + | |[[busco-software|BUSCO ]]|5.2.2|'' |
|[[bwa-software|bwa]]|0.7.17|'' | |[[bwa-software|bwa]]|0.7.17|'' | ||
|[[cafe-software|cafe]]|4.1|'' | |[[cafe-software|cafe]]|4.1|'' | ||
Line 56: | Line 57: | ||
|celera-wgs|6.1|'' | |celera-wgs|6.1|'' | ||
|censor|4.2.28|'' | |censor|4.2.28|'' | ||
+ | |[[centrifuge-software|centrifuge]]|1.0.4|'' | ||
|[[changeo-software|changeo]]|1.0.0|'' | |[[changeo-software|changeo]]|1.0.0|'' | ||
|[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
Line 70: | Line 72: | ||
|cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
|[[cutadapt-software|cutadapt]]|3.5|'' | |[[cutadapt-software|cutadapt]]|3.5|'' | ||
+ | |[[czid-cli-software|czid-cli]]|3.0.2|'' | ||
|[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
|dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
Line 112: | Line 115: | ||
|glu|1.0b3-prerelease4|'' | |glu|1.0b3-prerelease4|'' | ||
|[[gmap-software|gmap]]|2015-12-31|'' | |[[gmap-software|gmap]]|2015-12-31|'' | ||
+ | |[[graphlan-software|graphlan]]|1.1.3|'' | ||
|[[graphmap-software|graphmap]]|0.5.2|'' | |[[graphmap-software|graphmap]]|0.5.2|'' | ||
|[[grom-rd-software|grom-rd]]|1.0|'' | |[[grom-rd-software|grom-rd]]|1.0|'' | ||
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|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
|hapmix|2.0|'' | |hapmix|2.0|'' | ||
+ | |[[hawk-software|hawk]]|git-a177811d|'' | ||
|[[hclust2-software|hclust2]]|1.0.0|'' | |[[hclust2-software|hclust2]]|1.0.0|'' | ||
|[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
Line 153: | Line 158: | ||
|[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
|[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
+ | |[[kma-software|kma]]|1.4.0|'' | ||
|[[kmc-software|kmc]]|3.1.1|'' | |[[kmc-software|kmc]]|3.1.1|'' | ||
|[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
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|[[lighter-software|lighter]]|1.1.2|'' | |[[lighter-software|lighter]]|1.1.2|'' | ||
|[[lordec-software|lordec]]|0.9|'' | |[[lordec-software|lordec]]|0.9|'' | ||
+ | |[[ltr_retriever-software|ltr_retriever]]|2.9.0|'' | ||
|lucy|1.19p|'' | |lucy|1.19p|'' | ||
|[[mafft-software|mafft]]|7.475|'' | |[[mafft-software|mafft]]|7.475|'' | ||
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|[[mecat-software|MECAT]]|git-d04bfa84|'' | |[[mecat-software|MECAT]]|git-d04bfa84|'' | ||
|[[medaka-software|medaka]]|1.4.3|'' | |[[medaka-software|medaka]]|1.4.3|'' | ||
- | |[[megahit-software|megahit]]|1.1.4|'' | + | |[[megahit-software|megahit]]|1.2.9|'' |
|megan|4.70.4|'' | |megan|4.70.4|'' | ||
|[[megax-software|megax]]|10.0.5|'' | |[[megax-software|megax]]|10.0.5|'' | ||
|[[metabat-software|metabat]]|2.12.1|'' | |[[metabat-software|metabat]]|2.12.1|'' | ||
+ | |[[metaeuk-software|metaeuk]]|git-9818d1a5|'' | ||
|[[metaphlan-software|metaphlan]]|3.0.13|'' | |[[metaphlan-software|metaphlan]]|3.0.13|'' | ||
|[[metis-software|metis]]|5.1.0|'' | |[[metis-software|metis]]|5.1.0|'' | ||
Line 209: | Line 217: | ||
|[[nextclade-software|nextclade]]|1.3.0|'' | |[[nextclade-software|nextclade]]|1.3.0|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|21.04.3|'' | + | |[[nextflow-software|nextflow]]|21.10 (21.10.6)|'' |
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
|[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
Line 226: | Line 234: | ||
|[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
|[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
+ | |[[pathoscope-software|pathoscope]]|2.0.7|'' | ||
|[[pear-software|pear]]|0.9.6|'' | |[[pear-software|pear]]|0.9.6|'' | ||
|[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
Line 242: | Line 251: | ||
|[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
|[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
+ | |[[poplddecay-software|poplddecay]]|3.41|'' | ||
|[[porechop-software|porechop]]|0.2.4|'' | |[[porechop-software|porechop]]|0.2.4|'' | ||
|[[pplacer-software|pplacer]]|1.1.alpha19|'' | |[[pplacer-software|pplacer]]|1.1.alpha19|'' | ||
Line 283: | Line 293: | ||
|[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
|[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
- | |[[sepp-software|sepp]]|4.3.8|'' | + | |[[sepp-software|sepp]]|4.5.1|'' |
|[[seroba-software|seroba]]|1.0.0|'' | |[[seroba-software|seroba]]|1.0.0|'' | ||
|seq_crumbs|0.1.8|'' | |seq_crumbs|0.1.8|'' | ||
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|[[smalt-software|smalt]]|0.7.6|'' | |[[smalt-software|smalt]]|0.7.6|'' | ||
|[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | ||
- | |[[snakemake-software|snakemake]]|5.7.0|'' | + | |[[snakemake-software|snakemake]]|6.15.5|'' |
|[[sniffles-software|sniffles]]|1.0.12b|'' | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
|snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
Line 309: | Line 319: | ||
|[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | ||
|[[solexaqa-software|SolexaQA++]]|3.1.3|'' | |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | ||
- | |[[spades-software|spades]]|3.13.0|'' | + | |[[spades-software|spades]]|3.15 (3.15.4)|'' |
|[[sourmash-software|sourmash]]|1.0|'' | |[[sourmash-software|sourmash]]|1.0|'' | ||
|[[speedseq-software|speedseq]]|0.1.2|'' | |[[speedseq-software|speedseq]]|0.1.2|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth