list-of-software
Differences
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| list-of-software [2021/12/27 16:00] – aorth | list-of-software [2022/02/24 06:46] – aorth | ||
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| |[[barrnap-software|barrnap]]|0.9|'' | |[[barrnap-software|barrnap]]|0.9|'' | ||
| |bayescan|2.1|'' | |bayescan|2.1|'' | ||
| - | |[[bbmap-software|bbmap]]|38.67|'' | + | |[[bbmap-software|bbmap]]|38.95|'' |
| |[[bcftools-software|bcftools]]|1.13|'' | |[[bcftools-software|bcftools]]|1.13|'' | ||
| + | |bcl2fastq|2.20.0.422|'' | ||
| |[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
| |[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
| Line 40: | Line 41: | ||
| |[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
| |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
| - | |[[blast-software|blast]]|2.10.0+|'' | + | |[[blast-software|blast]]|2.12.0+|'' |
| |[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
| |blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
| Line 46: | Line 47: | ||
| |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
| |[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
| - | |[[busco-software|BUSCO ]]|4.0.6|'' | + | |[[busco-software|BUSCO ]]|5.2.2|'' |
| |[[bwa-software|bwa]]|0.7.17|'' | |[[bwa-software|bwa]]|0.7.17|'' | ||
| |[[cafe-software|cafe]]|4.1|'' | |[[cafe-software|cafe]]|4.1|'' | ||
| Line 56: | Line 57: | ||
| |celera-wgs|6.1|'' | |celera-wgs|6.1|'' | ||
| |censor|4.2.28|'' | |censor|4.2.28|'' | ||
| + | |[[centrifuge-software|centrifuge]]|1.0.4|'' | ||
| |[[changeo-software|changeo]]|1.0.0|'' | |[[changeo-software|changeo]]|1.0.0|'' | ||
| |[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
| Line 70: | Line 72: | ||
| |cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
| |[[cutadapt-software|cutadapt]]|3.5|'' | |[[cutadapt-software|cutadapt]]|3.5|'' | ||
| + | |[[czid-software|czid]]|3.0.2|'' | ||
| |[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
| |dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
| Line 123: | Line 126: | ||
| |[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
| |hapmix|2.0|'' | |hapmix|2.0|'' | ||
| + | |[[hawk-software|hawk]]|git-a177811d|'' | ||
| |[[hclust2-software|hclust2]]|1.0.0|'' | |[[hclust2-software|hclust2]]|1.0.0|'' | ||
| |[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
| Line 164: | Line 168: | ||
| |[[lighter-software|lighter]]|1.1.2|'' | |[[lighter-software|lighter]]|1.1.2|'' | ||
| |[[lordec-software|lordec]]|0.9|'' | |[[lordec-software|lordec]]|0.9|'' | ||
| + | |[[ltr_retriever-software|ltr_retriever]]|2.9.0|'' | ||
| |lucy|1.19p|'' | |lucy|1.19p|'' | ||
| |[[mafft-software|mafft]]|7.475|'' | |[[mafft-software|mafft]]|7.475|'' | ||
| Line 179: | Line 184: | ||
| |[[mecat-software|MECAT]]|git-d04bfa84|'' | |[[mecat-software|MECAT]]|git-d04bfa84|'' | ||
| |[[medaka-software|medaka]]|1.4.3|'' | |[[medaka-software|medaka]]|1.4.3|'' | ||
| - | |[[megahit-software|megahit]]|1.1.4|'' | + | |[[megahit-software|megahit]]|1.2.9|'' |
| |megan|4.70.4|'' | |megan|4.70.4|'' | ||
| |[[megax-software|megax]]|10.0.5|'' | |[[megax-software|megax]]|10.0.5|'' | ||
| |[[metabat-software|metabat]]|2.12.1|'' | |[[metabat-software|metabat]]|2.12.1|'' | ||
| + | |[[metaeuk-software|metaeuk]]|git-9818d1a5|'' | ||
| |[[metaphlan-software|metaphlan]]|3.0.13|'' | |[[metaphlan-software|metaphlan]]|3.0.13|'' | ||
| |[[metis-software|metis]]|5.1.0|'' | |[[metis-software|metis]]|5.1.0|'' | ||
| Line 242: | Line 248: | ||
| |[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
| |[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
| + | |[[poplddecay-software|poplddecay]]|3.41|'' | ||
| |[[porechop-software|porechop]]|0.2.4|'' | |[[porechop-software|porechop]]|0.2.4|'' | ||
| |[[pplacer-software|pplacer]]|1.1.alpha19|'' | |[[pplacer-software|pplacer]]|1.1.alpha19|'' | ||
| Line 283: | Line 290: | ||
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| - | |[[sepp-software|sepp]]|4.3.8|'' | + | |[[sepp-software|sepp]]|4.5.1|'' |
| |[[seroba-software|seroba]]|1.0.0|'' | |[[seroba-software|seroba]]|1.0.0|'' | ||
| |seq_crumbs|0.1.8|'' | |seq_crumbs|0.1.8|'' | ||
| Line 297: | Line 304: | ||
| |[[smalt-software|smalt]]|0.7.6|'' | |[[smalt-software|smalt]]|0.7.6|'' | ||
| |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | ||
| - | |[[snakemake-software|snakemake]]|5.7.0|'' | + | |[[snakemake-software|snakemake]]|6.15.5|'' |
| |[[sniffles-software|sniffles]]|1.0.12b|'' | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
| |snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
| Line 309: | Line 316: | ||
| |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | |[[soapdenovo-trans-software|SOAPdenovo-Trans]]|1.03|'' | ||
| |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | |[[solexaqa-software|SolexaQA++]]|3.1.3|'' | ||
| - | |[[spades-software|spades]]|3.13.0|'' | + | |[[spades-software|spades]]|3.15 (3.15.4)|'' |
| |[[sourmash-software|sourmash]]|1.0|'' | |[[sourmash-software|sourmash]]|1.0|'' | ||
| |[[speedseq-software|speedseq]]|0.1.2|'' | |[[speedseq-software|speedseq]]|0.1.2|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth