list-of-software
Differences
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| list-of-software [2021/11/09 08:23] – aorth | list-of-software [2021/12/28 11:42] – aorth | ||
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| |[[artemis-software|artemis]]|16.0.0|'' | |[[artemis-software|artemis]]|16.0.0|'' | ||
| |[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
| - | |[[awscli-software|awscli]]|1.17.9|'' | + | |[[awscli-software|awscli]]|2.4.0|'' |
| |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | ||
| |[[bamtools-software|bamtools]]|2.5.1|'' | |[[bamtools-software|bamtools]]|2.5.1|'' | ||
| Line 40: | Line 40: | ||
| |[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
| |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
| - | |[[blast-software|blast]]|2.10.0+|'' | + | |[[blast-software|blast]]|2.12.0+|'' |
| |[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
| |blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
| Line 69: | Line 69: | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| |cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
| - | |[[cutadapt-software|cutadapt]]|1.18|'' | + | |[[cutadapt-software|cutadapt]]|3.5|'' |
| |[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
| |dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
| Line 86: | Line 86: | ||
| |[[fastp-software|fastp]]|0.22.0|'' | |[[fastp-software|fastp]]|0.22.0|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| - | |[[fastqc-software|fastqc]]|0.11.7|'' | + | |[[fastqc-software|fastqc]]|0.11.9|'' |
| |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | ||
| |[[fasttree-software|fasttree]]|2.1.11|'' | |[[fasttree-software|fasttree]]|2.1.11|'' | ||
| Line 96: | Line 96: | ||
| |[[flexbar-software|flexbar]]|2.7.0|'' | |[[flexbar-software|flexbar]]|2.7.0|'' | ||
| |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | ||
| - | |[[flye-software|flye]]|2.8.1|'' | + | |[[flye-software|flye]]|2.9|'' |
| |frappe|1.1|'' | |frappe|1.1|'' | ||
| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| Line 268: | Line 268: | ||
| |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
| |[[recon-software|recon]]|1.08|'' | |[[recon-software|recon]]|1.08|'' | ||
| - | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.2-p1|'' |
| |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| Line 334: | Line 334: | ||
| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
| |[[trf-software|trf]]|4.0.9|'' | |[[trf-software|trf]]|4.0.9|'' | ||
| + | |[[trimgalore-software|trimgalore]]|0.6.7|'' | ||
| |[[trimmomatic-software|trimmomatic]]|0.39|'' | |[[trimmomatic-software|trimmomatic]]|0.39|'' | ||
| |[[trinity-software|trinity]]|v2.11.0|'' | |[[trinity-software|trinity]]|v2.11.0|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth