list-of-software
Differences
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| list-of-software [2021/09/20 07:50] – aorth | list-of-software [2021/12/28 12:23] – aorth | ||
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| |[[artemis-software|artemis]]|16.0.0|'' | |[[artemis-software|artemis]]|16.0.0|'' | ||
| |[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
| - | |[[awscli-software|awscli]]|1.17.9|'' | + | |[[awscli-software|awscli]]|2.4.0|'' |
| |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | ||
| |[[bamtools-software|bamtools]]|2.5.1|'' | |[[bamtools-software|bamtools]]|2.5.1|'' | ||
| Line 40: | Line 40: | ||
| |[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
| |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
| - | |[[blast-software|blast]]|2.10.0+|'' | + | |[[blast-software|blast]]|2.12.0+|'' |
| |[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
| |blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
| Line 46: | Line 46: | ||
| |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
| |[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
| - | |[[busco-software|BUSCO ]]|4.0.6|'' | + | |[[busco-software|BUSCO ]]|5.2.2|'' |
| |[[bwa-software|bwa]]|0.7.17|'' | |[[bwa-software|bwa]]|0.7.17|'' | ||
| |[[cafe-software|cafe]]|4.1|'' | |[[cafe-software|cafe]]|4.1|'' | ||
| Line 69: | Line 69: | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| |cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
| - | |[[cutadapt-software|cutadapt]]|1.18|'' | + | |[[cutadapt-software|cutadapt]]|3.5|'' |
| |[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
| |dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
| Line 86: | Line 86: | ||
| |[[fastp-software|fastp]]|0.22.0|'' | |[[fastp-software|fastp]]|0.22.0|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| - | |[[fastqc-software|fastqc]]|0.11.7|'' | + | |[[fastqc-software|fastqc]]|0.11.9|'' |
| |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | ||
| |[[fasttree-software|fasttree]]|2.1.11|'' | |[[fasttree-software|fasttree]]|2.1.11|'' | ||
| Line 96: | Line 96: | ||
| |[[flexbar-software|flexbar]]|2.7.0|'' | |[[flexbar-software|flexbar]]|2.7.0|'' | ||
| |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | ||
| - | |[[flye-software|flye]]|2.8.1|'' | + | |[[flye-software|flye]]|2.9|'' |
| |frappe|1.1|'' | |frappe|1.1|'' | ||
| |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
| Line 149: | Line 149: | ||
| |[[juicebox-software|juicebox]]|1.11.08|'' | |[[juicebox-software|juicebox]]|1.11.08|'' | ||
| |[[juicer-software|juicer]]|1.6|'' | |[[juicer-software|juicer]]|1.6|'' | ||
| - | |[[kaiju-software|kaiju]]|1.4.4|'' | + | |[[kaiju-software|kaiju]]|1.8.2|'' |
| |[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| Line 255: | Line 255: | ||
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| |[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
| - | |[[qiime2-software|qiime2]]|2020.8|'' | + | |[[qiime2-software|qiime2]]|2021.8|'' |
| |[[quast-software|quast]]|5.0.2|'' | |[[quast-software|quast]]|5.0.2|'' | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| Line 268: | Line 268: | ||
| |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
| |[[recon-software|recon]]|1.08|'' | |[[recon-software|recon]]|1.08|'' | ||
| - | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.2-p1|'' |
| |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| Line 280: | Line 280: | ||
| |[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
| |[[salsa-software|salsa]]|git-974589f3|'' | |[[salsa-software|salsa]]|git-974589f3|'' | ||
| + | |[[satsuma2-software|satsuma2]]|git-37c5f386|'' | ||
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| Line 326: | Line 327: | ||
| |tabix|git-76b4bbdf|'' | |tabix|git-76b4bbdf|'' | ||
| |[[tablet-software|tablet]]|1.17.08.17|'' | |[[tablet-software|tablet]]|1.17.08.17|'' | ||
| - | |[[tassel-software|tassel]]|4.0|'' | + | |[[tassel-software|tassel]]|5.2.77|'' |
| |[[tmiseq-software|tmiseq]]|2016-01-31|'' | |[[tmiseq-software|tmiseq]]|2016-01-31|'' | ||
| |[[tophat-software|tophat]]|2.1.0|'' | |[[tophat-software|tophat]]|2.1.0|'' | ||
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| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
| |[[trf-software|trf]]|4.0.9|'' | |[[trf-software|trf]]|4.0.9|'' | ||
| + | |[[trimgalore-software|trimgalore]]|0.6.7|'' | ||
| |[[trimmomatic-software|trimmomatic]]|0.39|'' | |[[trimmomatic-software|trimmomatic]]|0.39|'' | ||
| |[[trinity-software|trinity]]|v2.11.0|'' | |[[trinity-software|trinity]]|v2.11.0|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth