list-of-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
list-of-software [2021/09/16 05:46] – aorth | list-of-software [2021/12/15 07:54] – aorth | ||
---|---|---|---|
Line 24: | Line 24: | ||
|[[artemis-software|artemis]]|16.0.0|'' | |[[artemis-software|artemis]]|16.0.0|'' | ||
|[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
- | |[[awscli-software|awscli]]|1.17.9|'' | + | |[[awscli-software|awscli]]|2.4.0|'' |
|[[bam-readcount-software|bam-readcount]]|0.8.0|'' | |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | ||
|[[bamtools-software|bamtools]]|2.5.1|'' | |[[bamtools-software|bamtools]]|2.5.1|'' | ||
Line 69: | Line 69: | ||
|[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
|cufflinks|2.2.1|'' | |cufflinks|2.2.1|'' | ||
- | |[[cutadapt-software|cutadapt]]|1.18|'' | + | |[[cutadapt-software|cutadapt]]|3.5|'' |
|[[dextractor-software|dextractor]]|git-a7f50c52|'' | |[[dextractor-software|dextractor]]|git-a7f50c52|'' | ||
|dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
Line 86: | Line 86: | ||
|[[fastp-software|fastp]]|0.22.0|'' | |[[fastp-software|fastp]]|0.22.0|'' | ||
|[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
- | |[[fastqc-software|fastqc]]|0.11.7|'' | + | |[[fastqc-software|fastqc]]|0.11.9|'' |
|[[faststructure-software|fastSTRUCTURE]]|1.0|'' | |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | ||
|[[fasttree-software|fasttree]]|2.1.11|'' | |[[fasttree-software|fasttree]]|2.1.11|'' | ||
Line 106: | Line 106: | ||
|[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
|[[genometools-software|genometools]]|1.6.1|'' | |[[genometools-software|genometools]]|1.6.1|'' | ||
+ | |[[genomeworks-software|genomeworks]]|git-baab5668|'' | ||
|[[genscan-software|genscan]]|latest|'' | |[[genscan-software|genscan]]|latest|'' | ||
|[[gffread-software|gffread]]|0.9.6|'' | |[[gffread-software|gffread]]|0.9.6|'' | ||
Line 148: | Line 149: | ||
|[[juicebox-software|juicebox]]|1.11.08|'' | |[[juicebox-software|juicebox]]|1.11.08|'' | ||
|[[juicer-software|juicer]]|1.6|'' | |[[juicer-software|juicer]]|1.6|'' | ||
- | |[[kaiju-software|kaiju]]|1.4.4|'' | + | |[[kaiju-software|kaiju]]|1.8.2|'' |
|[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
|[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
Line 254: | Line 255: | ||
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
- | |[[qiime2-software|qiime2]]|2020.8|'' | + | |[[qiime2-software|qiime2]]|2021.8|'' |
|[[quast-software|quast]]|5.0.2|'' | |[[quast-software|quast]]|5.0.2|'' | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
Line 267: | Line 268: | ||
|[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
|[[recon-software|recon]]|1.08|'' | |[[recon-software|recon]]|1.08|'' | ||
- | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.2-p1|'' |
|[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
|[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
Line 279: | Line 280: | ||
|[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
|[[salsa-software|salsa]]|git-974589f3|'' | |[[salsa-software|salsa]]|git-974589f3|'' | ||
+ | |[[satsuma2-software|satsuma2]]|git-37c5f386|'' | ||
|[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
|[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
Line 325: | Line 327: | ||
|tabix|git-76b4bbdf|'' | |tabix|git-76b4bbdf|'' | ||
|[[tablet-software|tablet]]|1.17.08.17|'' | |[[tablet-software|tablet]]|1.17.08.17|'' | ||
- | |[[tassel-software|tassel]]|4.0|'' | + | |[[tassel-software|tassel]]|5.2.77|'' |
|[[tmiseq-software|tmiseq]]|2016-01-31|'' | |[[tmiseq-software|tmiseq]]|2016-01-31|'' | ||
|[[tophat-software|tophat]]|2.1.0|'' | |[[tophat-software|tophat]]|2.1.0|'' | ||
Line 332: | Line 334: | ||
|[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
|[[trf-software|trf]]|4.0.9|'' | |[[trf-software|trf]]|4.0.9|'' | ||
+ | |[[trimgalore-software|trimgalore]]|0.6.7|'' | ||
|[[trimmomatic-software|trimmomatic]]|0.39|'' | |[[trimmomatic-software|trimmomatic]]|0.39|'' | ||
|[[trinity-software|trinity]]|v2.11.0|'' | |[[trinity-software|trinity]]|v2.11.0|'' |
list-of-software.txt · Last modified: 2024/09/24 07:20 by aorth