list-of-software
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list-of-software [2021/09/05 11:18] – aorth | list-of-software [2021/11/03 09:40] – aorth | ||
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|[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
|[[fastANI-software|fastANI]]|1.3|'' | |[[fastANI-software|fastANI]]|1.3|'' | ||
+ | |[[fastp-software|fastp]]|0.22.0|'' | ||
|[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
|[[fastqc-software|fastqc]]|0.11.7|'' | |[[fastqc-software|fastqc]]|0.11.7|'' | ||
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|[[funannotate-software|funannotate]]|1.8.7|'' | |[[funannotate-software|funannotate]]|1.8.7|'' | ||
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
- | |[[gatk-software|GATK ]]|4.0.10.1|'' | + | |[[gatk-software|gatk]]|4.2.2.0|'' |
|[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
|[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
|[[genometools-software|genometools]]|1.6.1|'' | |[[genometools-software|genometools]]|1.6.1|'' | ||
+ | |[[genomeworks-software|genomeworks]]|git-baab5668|'' | ||
|[[genscan-software|genscan]]|latest|'' | |[[genscan-software|genscan]]|latest|'' | ||
|[[gffread-software|gffread]]|0.9.6|'' | |[[gffread-software|gffread]]|0.9.6|'' | ||
Line 121: | Line 123: | ||
|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
|hapmix|2.0|'' | |hapmix|2.0|'' | ||
+ | |[[hclust2-software|hclust2]]|1.0.0|'' | ||
|[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
|[[hmmer-software|hmmer]]|3.3|'' | |[[hmmer-software|hmmer]]|3.3|'' | ||
Line 173: | Line 176: | ||
|maximus|0.2|'' | |maximus|0.2|'' | ||
|[[mcl-software|mcl]]|14-137|'' | |[[mcl-software|mcl]]|14-137|'' | ||
+ | |[[mcscanx-software|mcscanx]]|git-97e74f40|'' | ||
|[[mecat-software|MECAT]]|git-d04bfa84|'' | |[[mecat-software|MECAT]]|git-d04bfa84|'' | ||
|[[medaka-software|medaka]]|1.4.3|'' | |[[medaka-software|medaka]]|1.4.3|'' | ||
Line 202: | Line 206: | ||
|[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
|[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
- | |[[nextalign-software|nextalign]]|0.1.7|'' | + | |[[nextalign-software|nextalign]]|1.3.0|'' |
- | |[[nextclade-software|nextclade]]|0.12.0|'' | + | |[[nextclade-software|nextclade]]|1.3.0|'' |
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
|[[nextflow-software|nextflow]]|21.04.3|'' | |[[nextflow-software|nextflow]]|21.04.3|'' | ||
Line 251: | Line 255: | ||
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
- | |[[qiime2-software|qiime2]]|2020.8|'' | + | |[[qiime2-software|qiime2]]|2021.8|'' |
|[[quast-software|quast]]|5.0.2|'' | |[[quast-software|quast]]|5.0.2|'' | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
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|[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
|[[salsa-software|salsa]]|git-974589f3|'' | |[[salsa-software|salsa]]|git-974589f3|'' | ||
+ | |[[satsuma2-software|satsuma2]]|git-37c5f386|'' | ||
|[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
|[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
Line 322: | Line 327: | ||
|tabix|git-76b4bbdf|'' | |tabix|git-76b4bbdf|'' | ||
|[[tablet-software|tablet]]|1.17.08.17|'' | |[[tablet-software|tablet]]|1.17.08.17|'' | ||
- | |[[tassel-software|tassel]]|4.0|'' | + | |[[tassel-software|tassel]]|5.2.77|'' |
|[[tmiseq-software|tmiseq]]|2016-01-31|'' | |[[tmiseq-software|tmiseq]]|2016-01-31|'' | ||
|[[tophat-software|tophat]]|2.1.0|'' | |[[tophat-software|tophat]]|2.1.0|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth