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list-of-software [2021/09/05 11:18] aorthlist-of-software [2021/09/06 11:36] aorth
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 |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| |
 |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| | |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| |
 +|[[fastp-software|fastp]]|0.22.0|''module load fastp/0.22.0''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 |[[fastqc-software|fastqc]]|0.11.7|''module load fastqc/0.11.7''| | |[[fastqc-software|fastqc]]|0.11.7|''module load fastqc/0.11.7''| |
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 |[[funannotate-software|funannotate]]|1.8.7|''module load funannotate/1.8.7''| | |[[funannotate-software|funannotate]]|1.8.7|''module load funannotate/1.8.7''| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| | |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
-|[[gatk-software|GATK ]]|4.0.10.1|''module load gatk/4.0.10.1''| |+|[[gatk-software|gatk]]|4.2.2.0|''module load gatk/4.2.2.0''| |
 |[[gapfiller-software|gapfiller]]|1.10|''module load gapfiller/1.10''| | |[[gapfiller-software|gapfiller]]|1.10|''module load gapfiller/1.10''| |
 |[[geneid-software|geneid]]|1.4.4|''module load geneid/1.4.4''| | |[[geneid-software|geneid]]|1.4.4|''module load geneid/1.4.4''| |
Line 202: Line 203:
 |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| | |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| | |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
-|[[nextalign-software|nextalign]]|0.1.7|''module load nextalign/0.1.7''| | +|[[nextalign-software|nextalign]]|1.3.0|''module load nextalign/1.3.0''| | 
-|[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |+|[[nextclade-software|nextclade]]|1.3.0|''module load nextclade/1.3.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
 |[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| | |[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| |
list-of-software.txt · Last modified: 2024/05/15 09:52 by aorth