Differences

This shows you the differences between two versions of the page.

--- list-of-software [2021/09/05 09:27] – aorth
+++ list-of-software [2021/09/06 10:36] – aorth
@@ Line 30: / Line 30: @@
 |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.67|''module load bbmap/38.67''| |
-|[[bcftools-software|bcftools]]|1.11|''module load bcftools/1.11''| |
+|[[bcftools-software|bcftools]]|1.13|''module load bcftools/1.13''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
 |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| |
@@ Line 84: / Line 84: @@
 |[[falcon-phase-software|falcon-phase]]|git-7c50154e|''module load falcon-phase/git-7c50154e''| |
 |[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| |
+|[[fastp-software|fastp]]|0.22.0|''module load fastp/0.22.0''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 |[[fastqc-software|fastqc]]|0.11.7|''module load fastqc/0.11.7''| |
@@ Line 128: / Line 129: @@
 |[[hisat2-software|hisat2]]|2.1.0|''module load hisat2/2.1.0''| |
 |[[htseq-software|htseq]]|0.9.1|''module load htseq/0.9.1''| |
-|[[htslib-software|htslib]]|1.11|''module load htslib/1.11''| |
+|[[htslib-software|htslib]]|1.13|''module load htslib/1.13''| |
 |[[hypo-software|hypo]]|1.0.3|''module load hypo/1.0.3''| |
 |[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| |
@@ Line 202: / Line 203: @@
 |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
-|[[nextalign-software|nextalign]]|0.1.7|''module load nextalign/0.1.7''| |
+|[[nextalign-software|nextalign]]|1.3.0|''module load nextalign/1.3.0''| |
-|[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
+|[[nextclade-software|nextclade]]|1.3.0|''module load nextclade/1.3.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
 |[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| |
@@ Line 231: / Line 232: @@
 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.25.5|''module load picard/2.25.5''| |
+|[[picard-software|picard]]|2.26.1|''module load picard/2.26.1''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
@@ Line 272: / Line 273: @@
 |[[rseqc-software|rseqc]]|2.6.4|''module load rseqc/2.6.4''| |
 |[[ruby-software|ruby]]|2.2.3|''module load ruby/2.2.3''| |
-|[[samtools-software|samtools]]|1.11|''module load samtools/1.11''| |
+|[[samtools-software|samtools]]|1.13|''module load samtools/1.13''| |
 |[[sailfish-software|sailfish]]|0.9.2|''module load sailfish/0.9.2''| |
 |[[salmon-software|salmon]]|1.3.0|''module load salmon/1.3.0''| |
@@ Line 329: / Line 330: @@
 |[[transrate-software|Transrate]]|1.0.3|''module load transrate/1.0.3''|  |
 |[[trf-software|trf]]|4.0.9|''module load trf/4.0.9''| |
-|[[trimmomatic-software|trimmomatic]]|0.38|''module load trimmomatic/0.38''| |
+|[[trimmomatic-software|trimmomatic]]|0.39|''module load trimmomatic/0.39''| |
 |[[trinity-software|trinity]]|v2.11.0|''module load trinity/v2.11.0''| |
 |[[trinotate-software|trinotate]]|2.0.2|''module load trinotate/2.0.2''| |