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list-of-software [2021/08/11 09:14] – aorthlist-of-software [2021/09/05 10:21] – aorth
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 |frappe|1.1|''module load frappe/1.1''| | |frappe|1.1|''module load frappe/1.1''| |
 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| | |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
-|[[freebayes-software|freebayes]]|1.0.2|''module load freebayes/1.0.2''| |+|[[freebayes-software|freebayes]]|1.3.4|''module load freebayes/1.3.4''| |
 |[[funannotate-software|funannotate]]|1.8.7|''module load funannotate/1.8.7''| | |[[funannotate-software|funannotate]]|1.8.7|''module load funannotate/1.8.7''| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| | |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
Line 118: Line 118:
 |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| | |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| |
 |[[guppy-software|guppy]]|5.0.11|''module load guppy/5.0.11''| | |[[guppy-software|guppy]]|5.0.11|''module load guppy/5.0.11''| |
 +|[[halcyon-software|halcyon]]|0.1.1|''module load halcyon/0.1.1''| |
 |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| | |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| |
 |hapmix|2.0|''module load hapmix/2.0''| | |hapmix|2.0|''module load hapmix/2.0''| |
Line 127: Line 128:
 |[[hisat2-software|hisat2]]|2.1.0|''module load hisat2/2.1.0''| | |[[hisat2-software|hisat2]]|2.1.0|''module load hisat2/2.1.0''| |
 |[[htseq-software|htseq]]|0.9.1|''module load htseq/0.9.1''| | |[[htseq-software|htseq]]|0.9.1|''module load htseq/0.9.1''| |
-|[[htslib-software|htslib]]|1.11|''module load htslib/1.11''| |+|[[htslib-software|htslib]]|1.13|''module load htslib/1.13''| |
 |[[hypo-software|hypo]]|1.0.3|''module load hypo/1.0.3''| | |[[hypo-software|hypo]]|1.0.3|''module load hypo/1.0.3''| |
 |[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| | |[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| |
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 |[[interproscan-software|interproscan]]|5.13|''module load interproscan/5.13''| | |[[interproscan-software|interproscan]]|5.13|''module load interproscan/5.13''| |
 |i-tasser|latest|''module load i-tasser/latest''| | |i-tasser|latest|''module load i-tasser/latest''| |
-|[[ivar-software|ivar]]|1.3|''module load ivar/1.3''| |+|[[ivar-software|ivar]]|1.3.1|''module load ivar/1.3.1''| |
 |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| | |[[jellyfish-software|jellyfish]]|2.3.0|''module load jellyfish/2.3.0''| |
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| | |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
Line 173: Line 174:
 |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| | |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| |
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| | |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
-|[[medaka-software|medaka]]|0.8.2|''module load medaka/0.8.2''| |+|[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |
 |[[megahit-software|megahit]]|1.1.4|''module load megahit/1.1.4''| | |[[megahit-software|megahit]]|1.1.4|''module load megahit/1.1.4''| |
 |megan|4.70.4|''module load megan/4.70.4''| | |megan|4.70.4|''module load megan/4.70.4''| |
 |[[megax-software|megax]]|10.0.5|''module load megax/10.0.5''| | |[[megax-software|megax]]|10.0.5|''module load megax/10.0.5''| |
 |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| | |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| |
-|[[metaphlan2-software|metaphlan2]]|2.9.5|''module load metaphlan2/2.9.5''| |+|[[metaphlan-software|metaphlan]]|3.0.13|''module load metaphlan/3.0.13''| |
 |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| | |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| |
 |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| | |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| |
 |[[migmap-software|migmap]]|1.0.2|''module load migmap/1.0.2''| | |[[migmap-software|migmap]]|1.0.2|''module load migmap/1.0.2''| |
 |[[miniasm-software|miniasm]]|0.3|''module load miniasm/0.3''| | |[[miniasm-software|miniasm]]|0.3|''module load miniasm/0.3''| |
-|[[minimap2-software|minimap2]]|2.13|''module load minimap2/2.13''| |+|[[minimap2-software|minimap2]]|2.22|''module load minimap2/2.22''| |
 |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| | |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| |
 |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| | |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| |
Line 204: Line 205:
 |[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| | |[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|21.04.1|''module load nextflow/21.04.1''| |+|[[nextflow-software|nextflow]]|21.04.3|''module load nextflow/21.04.3''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| | |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
 |[[nQuire-software|nQuire]]|git-a990a88e|''module load nQuire/git-a990a88e''| | |[[nQuire-software|nQuire]]|git-a990a88e|''module load nQuire/git-a990a88e''| |
 +|[[nvtop-software|nvtop]]|1.2.2|''module load nvtop/1.2.2''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| | |novacraft|3.02.07|''module load novacraft/3.02.07''| |
 |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| | |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| |
Line 246: Line 248:
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
 |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| |
-|[[python-software|python]]|3.7.10|''module load python/3.7''| |+|[[python-software|python]]|3.8.11|''module load python/3.8''| |
 |qdd|3_beta|''module load qdd/3_beta''| | |qdd|3_beta|''module load qdd/3_beta''| |
 |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| | |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth