list-of-software
Differences
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list-of-software [2021/06/20 09:04] – aorth | list-of-software [2021/09/05 10:21] – aorth | ||
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|[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
|[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
+ | |[[beast2-software|beast2]]|2.6.4|'' | ||
|[[bedops-software|bedops]]|2.4.29|'' | |[[bedops-software|bedops]]|2.4.29|'' | ||
|[[bedtools-software|bedtools]]|2.29.0|'' | |[[bedtools-software|bedtools]]|2.29.0|'' | ||
Line 97: | Line 98: | ||
|frappe|1.1|'' | |frappe|1.1|'' | ||
|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
- | |[[freebayes-software|FreeBayes | + | |[[freebayes-software|freebayes]]|1.3.4|'' |
+ | |[[funannotate-software|funannotate]]|1.8.7|'' | ||
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
|[[gatk-software|GATK ]]|4.0.10.1|'' | |[[gatk-software|GATK ]]|4.0.10.1|'' | ||
Line 115: | Line 117: | ||
|[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
|[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
+ | |[[guppy-software|guppy]]|5.0.11|'' | ||
+ | |[[halcyon-software|halcyon]]|0.1.1|'' | ||
|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
|hapmix|2.0|'' | |hapmix|2.0|'' | ||
Line 124: | Line 128: | ||
|[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
|[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
- | |[[htslib-software|htslib]]|1.11|'' | + | |[[htslib-software|htslib]]|1.13|'' |
|[[hypo-software|hypo]]|1.0.3|'' | |[[hypo-software|hypo]]|1.0.3|'' | ||
|[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
Line 137: | Line 141: | ||
|[[interproscan-software|interproscan]]|5.13|'' | |[[interproscan-software|interproscan]]|5.13|'' | ||
|i-tasser|latest|'' | |i-tasser|latest|'' | ||
- | |[[ivar-software|ivar]]|1.3|'' | + | |[[ivar-software|ivar]]|1.3.1|'' |
|[[jellyfish-software|jellyfish]]|2.3.0|'' | |[[jellyfish-software|jellyfish]]|2.3.0|'' | ||
|jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
Line 170: | Line 174: | ||
|[[mcl-software|mcl]]|14-137|'' | |[[mcl-software|mcl]]|14-137|'' | ||
|[[mecat-software|MECAT]]|git-d04bfa84|'' | |[[mecat-software|MECAT]]|git-d04bfa84|'' | ||
- | |[[medaka-software|medaka]]|0.8.2|'' | + | |[[medaka-software|medaka]]|1.4.3|'' |
|[[megahit-software|megahit]]|1.1.4|'' | |[[megahit-software|megahit]]|1.1.4|'' | ||
|megan|4.70.4|'' | |megan|4.70.4|'' | ||
|[[megax-software|megax]]|10.0.5|'' | |[[megax-software|megax]]|10.0.5|'' | ||
|[[metabat-software|metabat]]|2.12.1|'' | |[[metabat-software|metabat]]|2.12.1|'' | ||
- | |[[metaphlan2-software|metaphlan2]]|2.9.5|'' | + | |[[metaphlan-software|metaphlan]]|3.0.13|'' |
|[[metis-software|metis]]|5.1.0|'' | |[[metis-software|metis]]|5.1.0|'' | ||
|[[migec-software|migec]]|1.2.4a|'' | |[[migec-software|migec]]|1.2.4a|'' | ||
|[[migmap-software|migmap]]|1.0.2|'' | |[[migmap-software|migmap]]|1.0.2|'' | ||
|[[miniasm-software|miniasm]]|0.3|'' | |[[miniasm-software|miniasm]]|0.3|'' | ||
- | |[[minimap2-software|minimap2]]|2.13|'' | + | |[[minimap2-software|minimap2]]|2.22|'' |
|[[minpath-software|MinPath]]|1.0.2|'' | |[[minpath-software|MinPath]]|1.0.2|'' | ||
|[[mira-software# | |[[mira-software# | ||
Line 201: | Line 205: | ||
|[[nextclade-software|nextclade]]|0.12.0|'' | |[[nextclade-software|nextclade]]|0.12.0|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|21.04.1|'' | + | |[[nextflow-software|nextflow]]|21.04.3|'' |
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
|[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
|[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
|[[nQuire-software|nQuire]]|git-a990a88e|'' | |[[nQuire-software|nQuire]]|git-a990a88e|'' | ||
+ | |[[nvtop-software|nvtop]]|1.2.2|'' | ||
|novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
|[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
Line 243: | Line 248: | ||
|[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
|[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | ||
- | |[[python-software|python]]|3.7.10|'' | + | |[[python-software|python]]|3.8.11|'' |
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth