Differences

This shows you the differences between two versions of the page.

--- list-of-software [2021/05/05 17:26] – aorth
+++ list-of-software [2021/07/08 08:11] – aorth
@@ Line 33: / Line 33: @@
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
 |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| |
+|[[beast2-software|beast2]]|2.6.4|''module load beast2/2.6.4''| |
 |[[bedops-software|bedops]]|2.4.29|''module load bedops/2.4.29''| |
 |[[bedtools-software|bedtools]]|2.29.0|''module load bedtools/2.29.0''| |
@@ Line 115: / Line 116: @@
 |[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| |
 |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| |
+|[[guppy-software|guppy]]|5.0.11|''module load guppy/5.0.11''| |
 |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| |
 |hapmix|2.0|''module load hapmix/2.0''| |
@@ Line 201: / Line 203: @@
 |[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|20.10.0|''module load nextflow/20.10.0''| |
+|[[nextflow-software|nextflow]]|21.04.1|''module load nextflow/21.04.1''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
+|[[nQuire-software|nQuire]]|git-a990a88e|''module load nQuire/git-a990a88e''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| |
 |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| |
@@ Line 225: / Line 228: @@
 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.17.0|''module load picard/2.17.0''| |
+|[[picard-software|picard]]|2.25.5|''module load picard/2.25.5''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
@@ Line 241: / Line 244: @@
 |[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| |
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
+|[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| |
 |[[python-software|python]]|3.7.10|''module load python/3.7''| |
 |qdd|3_beta|''module load qdd/3_beta''| |
@@ Line 330: / Line 334: @@
 |[[usearch-software|usearch]]| v7.0.1090 |''module load usearch/v7.0.1090''| |
 |varscan|2.4.2|''module load varscan/2.4.2''| |
+|[[vcfdo-software|vcfdo]]|git-508cc19b|''module load vcfdo/git-508cc19b''| |
 |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| |
 |[[vcftools-software|vcftools]]|0.1.16|''module load vcftools/0.1.16''| |