list-of-software
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| list-of-software [2021/05/05 12:27] – aorth | list-of-software [2021/07/08 08:11] – aorth | ||
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| |[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
| |[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
| + | |[[beast2-software|beast2]]|2.6.4|'' | ||
| |[[bedops-software|bedops]]|2.4.29|'' | |[[bedops-software|bedops]]|2.4.29|'' | ||
| |[[bedtools-software|bedtools]]|2.29.0|'' | |[[bedtools-software|bedtools]]|2.29.0|'' | ||
| Line 115: | Line 116: | ||
| |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
| |[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
| + | |[[guppy-software|guppy]]|5.0.11|'' | ||
| |[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
| |hapmix|2.0|'' | |hapmix|2.0|'' | ||
| |[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
| |[[hmmer-software|hmmer]]|3.3|'' | |[[hmmer-software|hmmer]]|3.3|'' | ||
| + | |[[hmmIBD-software|hmmIBD]]|2.0.4|'' | ||
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
| Line 200: | Line 203: | ||
| |[[nextclade-software|nextclade]]|0.12.0|'' | |[[nextclade-software|nextclade]]|0.12.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|20.10.0|'' | + | |[[nextflow-software|nextflow]]|21.04.1|'' |
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| |[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
| |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
| + | |[[nQuire-software|nQuire]]|git-a990a88e|'' | ||
| |novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
| |[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
| Line 224: | Line 228: | ||
| |[[phylip-software|phylip]]|3.696|'' | |[[phylip-software|phylip]]|3.696|'' | ||
| |[[phyml-software|phyml]]|3.3.20180621|'' | |[[phyml-software|phyml]]|3.3.20180621|'' | ||
| - | |[[picard-software|picard]]|2.17.0|'' | + | |[[picard-software|picard]]|2.25.5|'' |
| |[[picrust-software# | |[[picrust-software# | ||
| |[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
| Line 240: | Line 244: | ||
| |[[prokka-software|prokka]]|1.14.6|'' | |[[prokka-software|prokka]]|1.14.6|'' | ||
| |[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
| + | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' | ||
| |[[python-software|python]]|3.7.10|'' | |[[python-software|python]]|3.7.10|'' | ||
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| Line 247: | Line 252: | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| - | |[[r-software|R]]|4.0.3|'' | + | |[[r-software|R]]|4.0.5|'' |
| |[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
| |[[rmblast-software|rmblast]]|2.11.0|'' | |[[rmblast-software|rmblast]]|2.11.0|'' | ||
| Line 329: | Line 334: | ||
| |[[usearch-software|usearch]]| v7.0.1090 |'' | |[[usearch-software|usearch]]| v7.0.1090 |'' | ||
| |varscan|2.4.2|'' | |varscan|2.4.2|'' | ||
| + | |[[vcfdo-software|vcfdo]]|git-508cc19b|'' | ||
| |[[vcflib-software|vcflib]]|git-7f1575e|'' | |[[vcflib-software|vcflib]]|git-7f1575e|'' | ||
| |[[vcftools-software|vcftools]]|0.1.16|'' | |[[vcftools-software|vcftools]]|0.1.16|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth