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list-of-software [2021/03/17 13:20] – aorthlist-of-software [2021/08/29 09:12] – aorth
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 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| | |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
 |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| | |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| |
 +|[[beast2-software|beast2]]|2.6.4|''module load beast2/2.6.4''| |
 |[[bedops-software|bedops]]|2.4.29|''module load bedops/2.4.29''| | |[[bedops-software|bedops]]|2.4.29|''module load bedops/2.4.29''| |
 |[[bedtools-software|bedtools]]|2.29.0|''module load bedtools/2.29.0''| | |[[bedtools-software|bedtools]]|2.29.0|''module load bedtools/2.29.0''| |
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 |frappe|1.1|''module load frappe/1.1''| | |frappe|1.1|''module load frappe/1.1''| |
 |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| | |[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
-|[[freebayes-software|FreeBayes ]]|1.0.2|''module load freebayes/1.0.2''| |+|[[freebayes-software|freebayes]]|1.3.4|''module load freebayes/1.3.4''| | 
 +|[[funannotate-software|funannotate]]|1.8.7|''module load funannotate/1.8.7''| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| | |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
 |[[gatk-software|GATK ]]|4.0.10.1|''module load gatk/4.0.10.1''| | |[[gatk-software|GATK ]]|4.0.10.1|''module load gatk/4.0.10.1''| |
Line 115: Line 117:
 |[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| | |[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| |
 |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| | |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| |
 +|[[guppy-software|guppy]]|5.0.11|''module load guppy/5.0.11''| |
 +|[[halcyon-software|halcyon]]|0.1.1|''module load halcyon/0.1.1''| |
 |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| | |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| |
 |hapmix|2.0|''module load hapmix/2.0''| | |hapmix|2.0|''module load hapmix/2.0''| |
 |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| | |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| |
 |[[hmmer-software|hmmer]]|3.3|''module load hmmer/3.3''| | |[[hmmer-software|hmmer]]|3.3|''module load hmmer/3.3''| |
 +|[[hmmIBD-software|hmmIBD]]|2.0.4|''module load hmmIBD/2.0.4''| |
 |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| | |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| |
 |[[hic_qc-software|hic_qc]]|git-1e132fb2|''module load hic_qc/git-1e132fb2''| | |[[hic_qc-software|hic_qc]]|git-1e132fb2|''module load hic_qc/git-1e132fb2''| |
Line 169: Line 174:
 |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| | |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| |
 |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| | |[[mecat-software|MECAT]]|git-d04bfa84|''module load MECAT/git-d04bfa84''| |
-|[[medaka-software|medaka]]|0.8.2|''module load medaka/0.8.2''| |+|[[medaka-software|medaka]]|1.4.3|''module load medaka/1.4.3''| |
 |[[megahit-software|megahit]]|1.1.4|''module load megahit/1.1.4''| | |[[megahit-software|megahit]]|1.1.4|''module load megahit/1.1.4''| |
 |megan|4.70.4|''module load megan/4.70.4''| | |megan|4.70.4|''module load megan/4.70.4''| |
 |[[megax-software|megax]]|10.0.5|''module load megax/10.0.5''| | |[[megax-software|megax]]|10.0.5|''module load megax/10.0.5''| |
 |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| | |[[metabat-software|metabat]]|2.12.1|''module load metabat/2.12.1''| |
-|[[metaphlan2-software|metaphlan2]]|2.9.5|''module load metaphlan2/2.9.5''| |+|[[metaphlan-software|metaphlan]]|3.0.13|''module load metaphlan/3.0.13''| |
 |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| | |[[metis-software|metis]]|5.1.0|''module load metis/5.1.0''| |
 |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| | |[[migec-software|migec]]|1.2.4a|''module load migec/1.2.4a''| |
 |[[migmap-software|migmap]]|1.0.2|''module load migmap/1.0.2''| | |[[migmap-software|migmap]]|1.0.2|''module load migmap/1.0.2''| |
 |[[miniasm-software|miniasm]]|0.3|''module load miniasm/0.3''| | |[[miniasm-software|miniasm]]|0.3|''module load miniasm/0.3''| |
-|[[minimap2-software|minimap2]]|2.13|''module load minimap2/2.13''| |+|[[minimap2-software|minimap2]]|2.22|''module load minimap2/2.22''| |
 |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| | |[[minpath-software|MinPath]]|1.0.2|''module load MinPath/1.2''| |
 |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| | |[[mira-software#v4.0.2|mira]]|4.0.2|''module load mira/4.0.2''| |
Line 200: Line 205:
 |[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| | |[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| |+|[[nextflow-software|nextflow]]|21.04.1|''module load nextflow/21.04.1''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| | |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
 +|[[nQuire-software|nQuire]]|git-a990a88e|''module load nQuire/git-a990a88e''| |
 +|[[nvtop-software|nvtop]]|1.2.2|''module load nvtop/1.2.2''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| | |novacraft|3.02.07|''module load novacraft/3.02.07''| |
 |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| | |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| |
Line 224: Line 231:
 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| | |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| | |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.17.0|''module load picard/2.17.0''| |+|[[picard-software|picard]]|2.25.5|''module load picard/2.25.5''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| | |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| | |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
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 |[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| | |[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| |
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
-|[[python-software|python]]|3.7.7|''module load python/3.7''| |+|[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|''module load purge_haplotigs/1.1.1''| | 
 +|[[python-software|python]]|3.8.11|''module load python/3.8''| |
 |qdd|3_beta|''module load qdd/3_beta''| | |qdd|3_beta|''module load qdd/3_beta''| |
 |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| | |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| |
Line 247: Line 255:
 |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| | |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| |
 |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| | |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| |
-|[[r-software|R]]|4.0.3|''module load R/4.0''| |+|[[r-software|R]]|4.0.5|''module load R/4.0''| |
 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| | |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
 |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| | |[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
Line 257: Line 265:
 |[[recon-software|recon]]|1.08|''module load recon/1.08''| | |[[recon-software|recon]]|1.08|''module load recon/1.08''| |
 |[[repeatmasker-software|repeatmasker]]|4.1.1|''module load repeatmasker/4.1.1''| | |[[repeatmasker-software|repeatmasker]]|4.1.1|''module load repeatmasker/4.1.1''| |
 +|[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| | |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
 |[[root-software|root]]|6.08.06|''module load root/6.08.06''| | |[[root-software|root]]|6.08.06|''module load root/6.08.06''| |
Line 328: Line 337:
 |[[usearch-software|usearch]]| v7.0.1090 |''module load usearch/v7.0.1090''| | |[[usearch-software|usearch]]| v7.0.1090 |''module load usearch/v7.0.1090''| |
 |varscan|2.4.2|''module load varscan/2.4.2''| | |varscan|2.4.2|''module load varscan/2.4.2''| |
 +|[[vcfdo-software|vcfdo]]|git-508cc19b|''module load vcfdo/git-508cc19b''| |
 |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| | |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| |
 |[[vcftools-software|vcftools]]|0.1.16|''module load vcftools/0.1.16''| | |[[vcftools-software|vcftools]]|0.1.16|''module load vcftools/0.1.16''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth