list-of-software
Differences
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list-of-software [2021/01/17 10:23] – aorth | list-of-software [2021/08/05 07:44] – aorth | ||
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|bayescan|2.1|'' | |bayescan|2.1|'' | ||
|[[bbmap-software|bbmap]]|38.67|'' | |[[bbmap-software|bbmap]]|38.67|'' | ||
- | |[[bcftools-software|bcftools]]|1.8|'' | + | |[[bcftools-software|bcftools]]|1.11|'' |
|[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
|[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
+ | |[[beast2-software|beast2]]|2.6.4|'' | ||
|[[bedops-software|bedops]]|2.4.29|'' | |[[bedops-software|bedops]]|2.4.29|'' | ||
|[[bedtools-software|bedtools]]|2.29.0|'' | |[[bedtools-software|bedtools]]|2.29.0|'' | ||
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|[[canu-software|canu]]|1.8|'' | |[[canu-software|canu]]|1.8|'' | ||
|cap3|latest|'' | |cap3|latest|'' | ||
- | |[[cd-hit-software|cd-hit]]|4.6.8|'' | + | |[[cd-hit-software|cd-hit]]|4.8.1|'' |
|[[cegma-software|cegma]]|v2.5|'' | |[[cegma-software|cegma]]|v2.5|'' | ||
|celera-wgs|6.1|'' | |celera-wgs|6.1|'' | ||
Line 97: | Line 98: | ||
|frappe|1.1|'' | |frappe|1.1|'' | ||
|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
- | |[[freebayes-software|FreeBayes ]]|1.0.2|'' | + | |[[freebayes-software|FreeBayes]]|1.0.2|'' |
+ | |[[funannotate-software|funannotate]]|1.8.7|'' | ||
|[[gassflow-software|GassFlow ]]|1.0|'' | |[[gassflow-software|GassFlow ]]|1.0|'' | ||
|[[gatk-software|GATK ]]|4.0.10.1|'' | |[[gatk-software|GATK ]]|4.0.10.1|'' | ||
Line 115: | Line 117: | ||
|[[gtdbtk-software|gtdbtk]]|1.1.1|'' | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
|[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
+ | |[[guppy-software|guppy]]|5.0.11|'' | ||
|[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
|hapmix|2.0|'' | |hapmix|2.0|'' | ||
|[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
|[[hmmer-software|hmmer]]|3.3|'' | |[[hmmer-software|hmmer]]|3.3|'' | ||
+ | |[[hmmIBD-software|hmmIBD]]|2.0.4|'' | ||
|[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
|[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
Line 140: | Line 144: | ||
|jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
|[[juicebox-software|juicebox]]|1.11.08|'' | |[[juicebox-software|juicebox]]|1.11.08|'' | ||
+ | |[[juicer-software|juicer]]|1.6|'' | ||
|[[kaiju-software|kaiju]]|1.4.4|'' | |[[kaiju-software|kaiju]]|1.4.4|'' | ||
|[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
Line 156: | Line 161: | ||
|[[lordec-software|lordec]]|0.9|'' | |[[lordec-software|lordec]]|0.9|'' | ||
|lucy|1.19p|'' | |lucy|1.19p|'' | ||
- | |[[mafft-software|mafft]]|7.313|'' | + | |[[mafft-software|mafft]]|7.475|'' |
|[[maker-software|maker]]|3.01.03|'' | |[[maker-software|maker]]|3.01.03|'' | ||
|[[mapsplice-software|mapsplice]]|2.2.0|'' | |[[mapsplice-software|mapsplice]]|2.2.0|'' | ||
Line 196: | Line 201: | ||
|[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
|[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
+ | |[[nextalign-software|nextalign]]|0.1.7|'' | ||
+ | |[[nextclade-software|nextclade]]|0.12.0|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|20.04.1|'' | + | |[[nextflow-software|nextflow]]|21.04.1|'' |
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
|[[ngmlr-software|ngmlr]]|0.2.7|'' | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
|[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
+ | |[[nQuire-software|nQuire]]|git-a990a88e|'' | ||
|novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
|[[oases-software|oases]]|0.2.08|'' | |[[oases-software|oases]]|0.2.08|'' | ||
Line 221: | Line 229: | ||
|[[phylip-software|phylip]]|3.696|'' | |[[phylip-software|phylip]]|3.696|'' | ||
|[[phyml-software|phyml]]|3.3.20180621|'' | |[[phyml-software|phyml]]|3.3.20180621|'' | ||
- | |[[picard-software|picard]]|2.17.0|'' | + | |[[picard-software|picard]]|2.25.5|'' |
|[[picrust-software# | |[[picrust-software# | ||
|[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
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|[[prokka-software|prokka]]|1.14.6|'' | |[[prokka-software|prokka]]|1.14.6|'' | ||
|[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
- | |[[python-software|python]]|3.7.7|'' | + | |[[purge-haplotigs-software|purge_haplotigs]]|1.1.1|'' |
+ | |[[python-software|python]]|3.7.10|'' | ||
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
Line 244: | Line 253: | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
- | |[[r-software|R]]|4.0.3|'' | + | |[[r-software|R]]|4.0.5|'' |
|[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
- | |[[rmblast-software|rmblast]]|2.10.0|'' | + | |[[rmblast-software|rmblast]]|2.11.0|'' |
|[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
|[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
Line 252: | Line 261: | ||
|[[ray-software|ray]]|2.3.1|'' | |[[ray-software|ray]]|2.3.1|'' | ||
|[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
+ | |[[recon-software|recon]]|1.08|'' | ||
|[[repeatmasker-software|repeatmasker]]|4.1.1|'' | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' | ||
+ | |[[repeatmodeler-software|repeatmodeler]]|2.0.1|'' | ||
|[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
|[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
Line 324: | Line 335: | ||
|[[usearch-software|usearch]]| v7.0.1090 |'' | |[[usearch-software|usearch]]| v7.0.1090 |'' | ||
|varscan|2.4.2|'' | |varscan|2.4.2|'' | ||
+ | |[[vcfdo-software|vcfdo]]|git-508cc19b|'' | ||
|[[vcflib-software|vcflib]]|git-7f1575e|'' | |[[vcflib-software|vcflib]]|git-7f1575e|'' | ||
- | |[[vcftools-software|vcftools]]|0.1.15|'' | + | |[[vcftools-software|vcftools]]|0.1.16|'' |
|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
|[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' |
list-of-software.txt · Last modified: 2024/09/24 07:20 by aorth