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list-of-software [2021/01/17 10:23] – aorthlist-of-software [2021/05/31 12:23] – aorth
Line 30: Line 30:
 |bayescan|2.1|''module load bayescan/2.1''| | |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.67|''module load bbmap/38.67''| | |[[bbmap-software|bbmap]]|38.67|''module load bbmap/38.67''| |
-|[[bcftools-software|bcftools]]|1.8|''module load bcftools/1.8''| |+|[[bcftools-software|bcftools]]|1.11|''module load bcftools/1.11''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| | |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
 |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| | |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| |
Line 51: Line 51:
 |[[canu-software|canu]]|1.8|''module load canu/1.8''| | |[[canu-software|canu]]|1.8|''module load canu/1.8''| |
 |cap3|latest|''module load cap3/latest''| | |cap3|latest|''module load cap3/latest''| |
-|[[cd-hit-software|cd-hit]]|4.6.8|''module load cd-hit/4.6.8''| |+|[[cd-hit-software|cd-hit]]|4.8.1|''module load cd-hit/4.8.1''| |
 |[[cegma-software|cegma]]|v2.5|''module load cegma/v2.5''| | |[[cegma-software|cegma]]|v2.5|''module load cegma/v2.5''| |
 |celera-wgs|6.1|''module load celera-wgs/6.1''| | |celera-wgs|6.1|''module load celera-wgs/6.1''| |
Line 119: Line 119:
 |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| | |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| |
 |[[hmmer-software|hmmer]]|3.3|''module load hmmer/3.3''| | |[[hmmer-software|hmmer]]|3.3|''module load hmmer/3.3''| |
 +|[[hmmIBD-software|hmmIBD]]|2.0.4|''module load hmmIBD/2.0.4''| |
 |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| | |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| |
 |[[hic_qc-software|hic_qc]]|git-1e132fb2|''module load hic_qc/git-1e132fb2''| | |[[hic_qc-software|hic_qc]]|git-1e132fb2|''module load hic_qc/git-1e132fb2''| |
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 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| | |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
 |[[juicebox-software|juicebox]]|1.11.08|''module load juicebox/1.11.08''| | |[[juicebox-software|juicebox]]|1.11.08|''module load juicebox/1.11.08''| |
 +|[[juicer-software|juicer]]|1.6|''module load juicer/1.6''| |
 |[[kaiju-software|kaiju]]|1.4.4|''module load kaiju/1.4.4''| | |[[kaiju-software|kaiju]]|1.4.4|''module load kaiju/1.4.4''| |
 |[[kallisto-software|kallisto]]|0.43.0|''module load kallisto/0.43.0''| | |[[kallisto-software|kallisto]]|0.43.0|''module load kallisto/0.43.0''| |
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 |[[lordec-software|lordec]]|0.9|''module load lordec/0.9''| | |[[lordec-software|lordec]]|0.9|''module load lordec/0.9''| |
 |lucy|1.19p|''module load lucy/1.19p''| | |lucy|1.19p|''module load lucy/1.19p''| |
-|[[mafft-software|mafft]]|7.313|''module load mafft/7.313''| |+|[[mafft-software|mafft]]|7.475|''module load mafft/7.475''| |
 |[[maker-software|maker]]|3.01.03|''module load maker/3.01.03''| | |[[maker-software|maker]]|3.01.03|''module load maker/3.01.03''| |
 |[[mapsplice-software|mapsplice]]|2.2.0|''module load mapsplice/2.2.0''| | |[[mapsplice-software|mapsplice]]|2.2.0|''module load mapsplice/2.2.0''| |
Line 196: Line 198:
 |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| | |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| | |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
 +|[[nextalign-software|nextalign]]|0.1.7|''module load nextalign/0.1.7''| |
 +|[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
-|[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| |+|[[nextflow-software|nextflow]]|21.04.1|''module load nextflow/21.04.1''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| | |[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
 +|[[nQuire-software|nQuire]]|git-a990a88e|''module load nQuire/git-a990a88e''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| | |novacraft|3.02.07|''module load novacraft/3.02.07''| |
 |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| | |[[oases-software|oases]]|0.2.08|''module load oases/0.2.08''| |
Line 221: Line 226:
 |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| | |[[phylip-software|phylip]]|3.696|''module load phylip/3.696''| |
 |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| | |[[phyml-software|phyml]]|3.3.20180621|''module load phyml/3.3.20180621''| |
-|[[picard-software|picard]]|2.17.0|''module load picard/2.17.0''| |+|[[picard-software|picard]]|2.25.5|''module load picard/2.25.5''| |
 |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| | |[[picrust-software#v1.0.0|picrust]]|1.0.0|''module load picrust/1.0.0''| |
 |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| | |[[pilon-software|pilon]]|1.23|''module load pilon/1.23''| |
Line 237: Line 242:
 |[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| | |[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| |
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
-|[[python-software|python]]|3.7.7|''module load python/3.7''| |+|[[python-software|python]]|3.7.10|''module load python/3.7''| |
 |qdd|3_beta|''module load qdd/3_beta''| | |qdd|3_beta|''module load qdd/3_beta''| |
 |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| | |[[qiime-software|qiime]]|1.9.1|''module load qiime/1.9.1''| |
Line 244: Line 249:
 |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| | |[[quickmerge-software|quickmerge]]|0.3|''module load quickmerge/0.3''| |
 |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| | |[[quorum-software|Quorum]]|1.1.1|''module load quorum/1.1.1''| |
-|[[r-software|R]]|4.0.3|''module load R/4.0''| |+|[[r-software|R]]|4.0.5|''module load R/4.0''| |
 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| | |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
-|[[rmblast-software|rmblast]]|2.10.0|''module load rmblast/2.10.0''| |+|[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| | |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
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 |[[ray-software|ray]]|2.3.1|''module load ray/2.3.1''| | |[[ray-software|ray]]|2.3.1|''module load ray/2.3.1''| |
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| | |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| |
 +|[[recon-software|recon]]|1.08|''module load recon/1.08''| |
 |[[repeatmasker-software|repeatmasker]]|4.1.1|''module load repeatmasker/4.1.1''| | |[[repeatmasker-software|repeatmasker]]|4.1.1|''module load repeatmasker/4.1.1''| |
 +|[[repeatmodeler-software|repeatmodeler]]|2.0.1|''module load repeatmodeler/2.0.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| | |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
 |[[root-software|root]]|6.08.06|''module load root/6.08.06''| | |[[root-software|root]]|6.08.06|''module load root/6.08.06''| |
Line 324: Line 331:
 |[[usearch-software|usearch]]| v7.0.1090 |''module load usearch/v7.0.1090''| | |[[usearch-software|usearch]]| v7.0.1090 |''module load usearch/v7.0.1090''| |
 |varscan|2.4.2|''module load varscan/2.4.2''| | |varscan|2.4.2|''module load varscan/2.4.2''| |
 +|[[vcfdo-software|vcfdo]]|git-508cc19b|''module load vcfdo/git-508cc19b''| |
 |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| | |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| |
-|[[vcftools-software|vcftools]]|0.1.15|''module load vcftools/0.1.15''| |+|[[vcftools-software|vcftools]]|0.1.16|''module load vcftools/0.1.16''| |
 |[[velvet-software|velvet]]|1.2.10-kmer111|''module load velvet/1.2.10-kmer111''| | |[[velvet-software|velvet]]|1.2.10-kmer111|''module load velvet/1.2.10-kmer111''| |
 |[[vep-software|vep]]|92.1|''module load vep/92.1''| | |[[vep-software|vep]]|92.1|''module load vep/92.1''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth